Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01574 | ATGGAGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTCGACCTAATTCGGTACGCATGCAACGAGATCCCTGATGGCGGAGCGAGTCATGTGGTTCAGCCAATCCCCGACCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAAGGGATGACAATATTTGA | 579 | 47.5 | MEKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYACNEIPDGGASHVVQPIPDLRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12321467 | 12323974 | - | Cp4.1LG04g15850.1 | Cpe04g01574 | 469136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01574 | 192 | Coils | Coil | 92 | 112 | - | - | |
Cpe04g01574 | 192 | Pfam | Lateral organ boundaries (LOB) domain | 13 | 109 | IPR004883 | - | |
Cpe04g01574 | 192 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 4 | 191 | - | - | |
Cpe04g01574 | 192 | ProSiteProfiles | LOB domain profile. | 12 | 113 | IPR004883 | - | |
Cpe04g01574 | 192 | PANTHER | ELONGATED PETIOLULE 1 | 4 | 191 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe04g01574 | Cpe09g01010 | CCT | |
Cpe04g01574 | Cpe18g00859 | CCT | |
Cpe04g01574 | Cpe09g01010 | ECH | |
Cpe04g01574 | Cpe18g00859 | ECH | |
Cpe04g01574 | Cpe20g00259 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe04g01574 | Cpe-Chr4:12321467 | Cpe11g00664 | Cpe-Chr11:4450407 | 3.05E-58 | dispersed | |
Cpe01g02332 | Cpe-Chr1:19603996 | Cpe04g01574 | Cpe-Chr4:12321467 | 1.10E-68 | wgd | |
Cpe18g00859 | Cpe-Chr18:7908787 | Cpe04g01574 | Cpe-Chr4:12321467 | 5.02E-119 | wgd | |
Cpe20g00259 | Cpe-Chr20:1458285 | Cpe04g01574 | Cpe-Chr4:12321467 | 2.25E-63 | wgd | |
Cpe04g00534 | Cpe-Chr4:5794118 | Cpe04g01574 | Cpe-Chr4:12321467 | 3.97E-70 | wgd | |
Cpe04g01574 | Cpe-Chr4:12321467 | Cpe09g01010 | Cpe-Chr9:8933543 | 4.85E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49452 | PF03195 | LOB | 6.00E-42 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01574 | - | - | cmos:111438177 | 395.586 |