Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01574 ATGGAGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTCGACCTAATTCGGTACGCATGCAACGAGATCCCTGATGGCGGAGCGAGTCATGTGGTTCAGCCAATCCCCGACCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAAATAACATCAATGAAGGAGGAAGGGATGACAATATTTGA 579 47.5 MEKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYACNEIPDGGASHVVQPIPDLRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGNNINEGGRDDNI 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12321467 12323974 - Cp4.1LG04g15850.1 Cpe04g01574 469136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01574 192 Coils Coil 92 112 - -
Cpe04g01574 192 Pfam Lateral organ boundaries (LOB) domain 13 109 IPR004883 -
Cpe04g01574 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 191 - -
Cpe04g01574 192 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cpe04g01574 192 PANTHER ELONGATED PETIOLULE 1 4 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01574 Cpe09g01010 CCT
Cpe04g01574 Cpe18g00859 CCT
Cpe04g01574 Cpe09g01010 ECH
Cpe04g01574 Cpe18g00859 ECH
Cpe04g01574 Cpe20g00259 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01574 Cpe-Chr4:12321467 Cpe11g00664 Cpe-Chr11:4450407 3.05E-58 dispersed
Cpe01g02332 Cpe-Chr1:19603996 Cpe04g01574 Cpe-Chr4:12321467 1.10E-68 wgd
Cpe18g00859 Cpe-Chr18:7908787 Cpe04g01574 Cpe-Chr4:12321467 5.02E-119 wgd
Cpe20g00259 Cpe-Chr20:1458285 Cpe04g01574 Cpe-Chr4:12321467 2.25E-63 wgd
Cpe04g00534 Cpe-Chr4:5794118 Cpe04g01574 Cpe-Chr4:12321467 3.97E-70 wgd
Cpe04g01574 Cpe-Chr4:12321467 Cpe09g01010 Cpe-Chr9:8933543 4.85E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49452 PF03195 LOB 6.00E-42 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01574 - - cmos:111438177 395.586