Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01577 ATGAAAGCAGGACGTACCAGCGAGCTTAGGGACAGAGCTCCAGCAGCCGACGCCGAAAGTGGCAATGTAATTGAAGAGCTTTTCATCTTCCTCGGGCGACCAGAGGCCTTTGCGGAGTTTAGACTTCAAGCAACAAGAATTGCGTCCCATCAGAAAGCGAAAAAAGCAAAAGGAAAAACAGAGGAATTTGGAGGTGTACAGAGGGAGAGTGGCAGTGGGTTCTTCGTCTTAATTCTCTGTGTTTTCACTTTTCTTCAATCCGCAAGTGGAGTCGTCGACCGGGCGGCGGCGAAGAGAGGGTGGCTATGGCGGATGATACTTACGGCGGCGCTTCACTTCCTTCAGGCCTCTGCTGGCGGCTCCATTGGTGCTGCCGTCAAGCTCAATCGTGGCGATGCTGATATTGCTATCAATTGGGCTGGTGGGCTTCATCACGCTAAGAAGTCTGAGGCCTCCGGTTTCTGTTACGTTAATGATATTGTATTGGGCATCCTTGAGCTGCTGAAGTATCACAAGCGTGTACTATACATTGACATTGACGTCCATCATGGTGATGGCGTGGAGGAGGCATTTTATACTACTGACAGAGTAATGACGGTCTCCTTTCATAAATTTGGGGATTTCTTTCCTGGGACAGGGCACATTAAGGATGTTGGAGTAGGGTCTGGTAAAAACTATGCCCTTAATGTCCCCCTAAATGATGGAATGGATGATGACAGTTTCCGTGGTCTGTTTAGGCCACTCATTCAAAAAGTTATGGAGGTGTATCAGCCTGATGCGGTTGTACTCCAATGTGGAGCTGATTCATTAGCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAGGGCCATGCAGATTGTCTTCGTTTCTTGAGATCGTTTAACGTTCCTTTAATGGTGTTAGGCGGAGGAGGATATACTATCCGCAATGTTGCTCGCTGTTGGTGTTACGAGACAGCAGTTGCTGTTGGAGTTGAACCAGACAACAAATTGCCTTACAACGAGTATTTCGAGTATTTTGGACCTGATTATACTCTTCATATAGAACCATCCAACATGGAGAATCTAAATTCCCCTAAAGACATGGAAAAGATAAGGAACACCCTGCTGGAGCAACTCTCTAGACTCCCACATGCCCCCAGTGTACCTTTCCAGATGACTCCTTCCTCCGAAGTTCCAGAAGAGGTGGAAGAGAACATGGAACGTAGACCCAAACGCCGCATCTGGAATGGTGAGGATTATGATTCTGATGCTGAAGAAAACAGAAAGCGACCAAATAACAGTGAAGGGCCTGGTGTAAATAATCTGACGAGGGACGAAGTAGATGGTATGGAGGAAGATAAGAACATGGACCATCAACCTCGTTGA 1371 47.19 MKAGRTSELRDRAPAADAESGNVIEELFIFLGRPEAFAEFRLQATRIASHQKAKKAKGKTEEFGGVQRESGSGFFVLILCVFTFLQSASGVVDRAAAKRGWLWRMILTAALHFLQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGSGKNYALNVPLNDGMDDDSFRGLFRPLIQKVMEVYQPDAVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEEVEENMERRPKRRIWNGEDYDSDAEENRKRPNNSEGPGVNNLTRDEVDGMEEDKNMDHQPR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12326760 12333187 - Cp4.1LG04g15830.1 Cpe04g01577 469139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01577 456 PRINTS Histone deacetylase superfamily signature 258 268 IPR000286 -
Cpe04g01577 456 PRINTS Histone deacetylase superfamily signature 141 164 IPR000286 -
Cpe04g01577 456 PRINTS Histone deacetylase superfamily signature 173 188 IPR000286 -
Cpe04g01577 456 PANTHER HISTONE DEACETYLASE 6 110 426 - -
Cpe04g01577 456 CDD HDAC_classI 112 323 - -
Cpe04g01577 456 PANTHER HISTONE DEACETYLASE 110 426 - -
Cpe04g01577 456 SUPERFAMILY Arginase/deacetylase 110 376 IPR023696 -
Cpe04g01577 456 Pfam Histone deacetylase domain 108 321 IPR023801 -
Cpe04g01577 456 MobiDBLite consensus disorder prediction 440 456 - -
Cpe04g01577 456 MobiDBLite consensus disorder prediction 396 427 - -
Cpe04g01577 456 MobiDBLite consensus disorder prediction 379 456 - -
Cpe04g01577 456 Gene3D Histone deacetylase domain 105 389 IPR037138 -
Cpe04g01577 456 PRINTS Histone deacetylase signature 160 176 IPR003084 GO:0004407|GO:0016575
Cpe04g01577 456 PRINTS Histone deacetylase signature 219 232 IPR003084 GO:0004407|GO:0016575
Cpe04g01577 456 PRINTS Histone deacetylase signature 236 254 IPR003084 GO:0004407|GO:0016575
Cpe04g01577 456 PRINTS Histone deacetylase signature 119 139 IPR003084 GO:0004407|GO:0016575
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01577 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101204443 670.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01577 Cpe18g00862 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01577 Cpe-Chr4:12326760 Cpe05g01328 Cpe-Chr5:9331548 2.39E-153 dispersed
Cpe04g00883 Cpe-Chr4:8080369 Cpe04g01577 Cpe-Chr4:12326760 2.51E-24 transposed
Cpe10g00327 Cpe-Chr10:1920825 Cpe04g01577 Cpe-Chr4:12326760 4.97E-18 transposed
Cpe18g00702 Cpe-Chr18:6957198 Cpe04g01577 Cpe-Chr4:12326760 2.24E-22 transposed
Cpe18g00862 Cpe-Chr18:7920825 Cpe04g01577 Cpe-Chr4:12326760 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01577 Cpe_Chr04 FPKM 2.63827 1.765602 2.963272 4.227863 3.966908 3.879624 4.99999 1.94106 1.836515 1.673214