Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01586 ATGGCGGCCATTTCCTTAGCTTCCGCTCCCACTTCCACTTCCTCCAAGCTCGCTTTCCCGCATCCCTCTCCTTCGCCCTTTTCCTCCAAACCCTCCTCTATCACCAAGCTTTCTTCCTCTTTCTTGAATCCTTCTTCTCTTCGCCCTCTAACCTTCACTTCTTCCTCTTCCGCCACTGTTAAACGCTCTCCTTCCTTCACTATTCGCGCCGCTCGTGGCAAATTCGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAGACCACTCTCACCGCCGCTTTAACCATGGCTTTGAGCAAAGCCCCAAAGAAATATGACGAAATTGACGCCGCACCTGAAGAGCGAGCTCGGGGTATTACGATTAACACCGCCACCGTTGAGTACGAGACTGAGAGCCGACATTACGCCCACGTTGATTGCCCTGGCCATGCTGATTACGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGCGCAATTTTGGTTGTTTCGGGCGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTCCCCAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGACGAGGAGCTTCTGGAGCTTGTGGAATTGGAGATGCGTGAGTTGCTTTCGTCTTATGAATTTCCAGGTGATGATGTCCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTCTAATGGCTAACCCCAATATTGTTAGAGGCGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGTTATATTCCCATACCCGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTGGCGACAGGGCGTGTCGAGAGGGGTACCGTTAGGGTTGGAGAGACAGTGGATATTGTAGGATTGAGGGAAACTAGAAACACAACAGTAACAGGGGTGGAGATGTTTCAGAAAATTCTTGATGAAGCTTTGGCTGGGGATAATGTAGGATTGTTGCTTAGAGGTGTTCAAAAGGCTGATATCCAGAGAGGGATGGTTTTGGCCAAGCCTGGCACCATCACCCCACACACCAAGTTTGTTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCCGGTTACCGACCACAATTTTACATGAGGACGACCGATGTCACCGGTAAGGTGACTTCGATTATGAATGACAAGGACGAGGAGTCAAAAATGGTTATGCCAGGAGACCGAGTGAAAATGGTTGTTGAACTGATAATGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCCATCAGAGAAGGTGGAAAGACTGTTGGAGCTGGTGTGATCCAATCTATAATCGAATACCTTTTTGTCCCCTCTCTTGTGCTGCTTAGTTTTGTGGAGGTAAAAGCATTCAGAGGTAGCTTCATTTGTAGCTCATCAATAGCATTGAAATTCTTGTTTTTTGATATTGCCATGAAGTTATTGAAGAAGGCATTAGTGGCTTTAGGCTGGTCATACTTGCGGCAGTTAAATTGCTTGAAGGTAAAGGTGTAA 1617 46.26 MAAISLASAPTSTSSKLAFPHPSPSPFSSKPSSITKLSSSFLNPSSLRPLTFTSSSSATVKRSPSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANPNIVRGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFVAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIEYLFVPSLVLLSFVEVKAFRGSFICSSSIALKFLFFDIAMKLLKKALVALGWSYLRQLNCLKVKV 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12368260 12370346 - Cp4.1LG04g15820.1 Cpe04g01586 469148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01586 538 PANTHER ELONGATION FACTOR TU-RELATED 36 474 - -
Cpe04g01586 538 TIGRFAM small_GTP: small GTP-binding protein domain 82 212 IPR005225 GO:0005525
Cpe04g01586 538 PRINTS GTP-binding elongation factor signature 159 170 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 PRINTS GTP-binding elongation factor signature 196 205 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 PRINTS GTP-binding elongation factor signature 83 96 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 PRINTS GTP-binding elongation factor signature 123 131 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
Cpe04g01586 538 Gene3D Translation factors 413 473 - -
Cpe04g01586 538 Pfam Elongation factor Tu GTP binding domain 79 276 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 PANTHER ELONGATION FACTOR TU 36 474 - -
Cpe04g01586 538 Pfam Elongation factor Tu domain 2 300 368 IPR004161 GO:0005525
Cpe04g01586 538 Gene3D Translation factors 281 409 - -
Cpe04g01586 538 CDD EF_Tu 80 278 IPR041709 -
Cpe04g01586 538 SUPERFAMILY Translation proteins 280 376 IPR009000 -
Cpe04g01586 538 MobiDBLite consensus disorder prediction 1 31 - -
Cpe04g01586 538 CDD EFTU_II 286 372 IPR033720 -
Cpe04g01586 538 Hamap Elongation factor Tu [tuf]. 70 474 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cpe04g01586 538 Gene3D - 71 278 IPR027417 -
Cpe04g01586 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 294 IPR027417 -
Cpe04g01586 538 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 79 279 IPR000795 GO:0003924|GO:0005525
Cpe04g01586 538 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 373 473 IPR009001 -
Cpe04g01586 538 CDD EFTU_III 375 469 - -
Cpe04g01586 538 Pfam Elongation factor Tu C-terminal domain 373 472 IPR004160 -
Cpe04g01586 538 TIGRFAM EF-Tu: translation elongation factor Tu 71 474 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01586 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 813.527
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01586 Cpe18g00872 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01586 Cpe-Chr4:12368260 Cpe12g01006 Cpe-Chr12:8430408 0 dispersed
Cpe18g00872 Cpe-Chr18:7971397 Cpe04g01586 Cpe-Chr4:12368260 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01586 Cpe_Chr04 FPKM 7.376334 6.313209 9.922022 10.834926 20.676418 21.650347 21.784435 7.023561 6.490782 7.239811