Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01587 ATGGAAACTCTTCTTCTTCTTCAATCATCACTTCATCCAATTTTGTTCGGTGGTTGCGTCCTTGTCCTGATCTTCCTTCTCCAAAAATGGCTGCTTTCCAATCAAAACTCATCAAAAGCCTCGCCGCCATCGCCGCCAAAGCATCCAATCTTCGGCCACCTTTTGAAGCTTGGCCGCCTTCCTCATATTACTCTCCAAAACTATGCTCGCCGCTATGGTCCTCTGTTTCTCCTTCACTTGGGCGCCAAGCCCACCATCGTGGTCTCTTCTCCCCAACTGGCTCGTGATATCATGAAGACCCACGACCTTAGCTTTGCCAATCGACCCAAATCAAGCATGGCTGATAAGCTTCTTTATGGGTCAAAAGATATAGCGATGTCTCCTTATGGTGAATATTGGAGGCGGATGAGAAGCATCGGCGTGCTCCGTCTTTTGAGCCACAACAGTGTCCAATCGTTTTGTTGTGTTAGAGAACAAGAAGTGAAGGCCATGATCGACAACATCCAACGCAATCCACTGTCGGTTAATTTCACTGAACTCTTCTCTGGACTGACCAACGACGTGATTTGCAGGGTGGCCTTTGGGAGAAAATATGGGATTGGTCAAGATGGGTCGAAGCTTAGGTCCCTTCTCTTGCAATTTGGGGAGTTAATGGCGAGTTTTATCATTCGAGACTACGTTCCATTGCTGGGTTGGATCGATGGCATTACTGGGTTCGACGCCAAAGCCAAGAGGGTAGCCAAAGAGCTGGACATTTTGTTAGATGAAGTGATTCAAGATCATATTCATTTACAGAACAGAGCAGAGCACAAGGACTTGGTGGATATTCTACTCTCTATCCAAGCGAGGGAGAGAGAGAGCAATGGAGACTCTTCAAACTCTTCAGACTCTTCTTCTTCATCCAATTTCGTTCACTGCTTTCGTCCTTATCCTGATCTTCCTTCTCCAAAAATGGCTGCTTTCCAATCAAAACACATCAAAAGCCTCACCACCATCTCCGCCAAAGCATCCAATCTTCGGCCACCTTTTGAAGCTCGGCCGCCTTCCTCATATCACTCTCCAAAACTATGCTCGCCGCTATGGTCCTCTGTTTCTCCTTCACTTGGGCGCCAAGCCCACCATCGTGGTCTCTTCTCCCCAACTGGCTCGTGA 1152 47.74 METLLLLQSSLHPILFGGCVLVLIFLLQKWLLSNQNSSKASPPSPPKHPIFGHLLKLGRLPHITLQNYARRYGPLFLLHLGAKPTIVVSSPQLARDIMKTHDLSFANRPKSSMADKLLYGSKDIAMSPYGEYWRRMRSIGVLRLLSHNSVQSFCCVREQEVKAMIDNIQRNPLSVNFTELFSGLTNDVICRVAFGRKYGIGQDGSKLRSLLLQFGELMASFIIRDYVPLLGWIDGITGFDAKAKRVAKELDILLDEVIQDHIHLQNRAEHKDLVDILLSIQARERESNGDSSNSSDSSSSSNFVHCFRPYPDLPSPKMAAFQSKHIKSLTTISAKASNLRPPFEARPPSSYHSPKLCSPLWSSVSPSLGRQAHHRGLFSPTGS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12371286 12375150 + Cp4.1LG04g15950.1 Cpe04g01587 469149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01587 383 SUPERFAMILY Cytochrome P450 42 288 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01587 383 Pfam Cytochrome P450 42 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01587 383 Gene3D Cytochrome P450 27 303 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01587 383 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 21 283 - -
Cpe04g01587 383 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01587 383 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cpe04g01587 383 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01587 - - - cmax:111497450 430.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01587 Cpe-Chr4:12371286 Cpe10g00585 Cpe-Chr10:3409853 2.11E-19 dispersed
Cpe04g01587 Cpe-Chr4:12371286 Cpe04g01588 Cpe-Chr4:12379902 2.55E-62 tandem
Cpe10g01076 Cpe-Chr10:6502595 Cpe04g01587 Cpe-Chr4:12371286 5.95E-42 transposed
Cpe18g00874 Cpe-Chr18:7974154 Cpe04g01587 Cpe-Chr4:12371286 1.05E-29 wgd
Cpe04g01587 Cpe-Chr4:12371286 Cpe09g00551 Cpe-Chr9:3724945 5.94E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g854 . . . Bda15g00533 . . . . . Cmo18g00168 Cma10g00089 . . . . . Cpe04g01587 Bhi02g00596 . . . . . . . . . . . . . . . . . Lsi02g00427 Csa01g00906 Chy12g01222 Cme12g01648 . . . . . . . . . Cmo10g00091 . . Cma18g00201 . . . . Bhi08g01673 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01587 Cpe_Chr04 FPKM 35.694469 41.183735 33.297691 31.619617 36.78241 28.941895 36.517014 25.664299 29.323074 27.38254