Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01589 ATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTAGTCGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATATGCTCAACCAAGAACCACGCCGCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTTACTGCAGCATTGGCTAGTGCTGGCCTGGAGTCTTCAAATCTTATTGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCCAAATCCCTATGAACAAGCAATAGCAATTATTGGGCAAACGTTATCGTCATTCGATGAGGATAATATGATCCCTTGCTTCGGTTTTGGAGATGCATCAACTCATGACCAAGAGGTTTTCAGTTTTTATCCAGACGAGCGATTCTGTAATGGATTTGAAGAAGTGTTGAGTAGATATAGGGAACTCATGCCTCATCTTCGACTAGCAGGGCCAACATCATTTGCCCCTATTATCGAAATGGCTATCACAATCGTAGAGCAAAGTGGCGGCCAGTACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTTGATACTGAGCGTGGGCAGTTTAGCTCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGCGAATACCCTCTGTCGATTATACTAGTTGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAATATCCCAGCTCGAGCCTTCGATAACTTCCAATTTGTGAATTTCACAGATATAATGTTGAAAAATATGGATCGATCAAGAAAGGAAGCGGAATTCGCTCTTTCAGCACTCATGGAAATACCTTCTCAGTATAAAGCAACAATAGAGCTTGATATTTTGGGTGCCAGTAGAGGGAAGGCAATTGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCTCCCAAAAGACCTCAAACACGAGCAGTTCTTGCACAACACCACCCTCAAATGGTGGAGTTGCTCCTGTCCGATCTGCGCCTCCTCTAAGTTCGGTTTCTGATGACCATGTAAATGCTTCTTTTACCTTTGTTTTCATTTTACTTGGTACAATAATTGGAAACGGAAATGAAGATTTTTACACTGTCTGGTGCAGACTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTGAGTCGTGCCCCATATGTCGCAGCTTTATCCAAACTAGGATAA 1374 43.96 MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGARKRVERKYSRIDDHYNSLDQVTAALASAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEPNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLSRYRELMPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSSQEKKTIEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTDIMLKNMDRSRKEAEFALSALMEIPSQYKATIELDILGASRGKAIDRVPLPPPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHVNASFTFVFILLGTIIGNGNEDFYTVWCRLVPFASPMQRIWLLAVDIRHAVNVDRILSRAPYVAALSKLG 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12386492 12391104 + Cp4.1LG04g15920.1 Cpe04g01589 469151

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01589 457 MobiDBLite consensus disorder prediction 350 370 - -
Cpe04g01589 457 PANTHER COPINE FAMILY PROTEIN 1 1 388 - -
Cpe04g01589 457 MobiDBLite consensus disorder prediction 1 46 - -
Cpe04g01589 457 MobiDBLite consensus disorder prediction 338 376 - -
Cpe04g01589 457 PANTHER RING-FINGER PROTEIN 1 388 - -
Cpe04g01589 457 Pfam Copine 117 330 IPR010734 -
Cpe04g01589 457 SMART VWA_4 92 297 IPR002035 -
Cpe04g01589 457 SUPERFAMILY vWA-like 93 276 IPR036465 -
Cpe04g01589 457 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01589 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 659.833
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01589 Cpe-Chr4:12386492 Cpe13g00875 Cpe-Chr13:7576077 1.82E-176 dispersed
Cpe01g02320 Cpe-Chr1:19526946 Cpe04g01589 Cpe-Chr4:12386492 3.55E-94 wgd
Cpe03g00593 Cpe-Chr3:3572782 Cpe04g01589 Cpe-Chr4:12386492 6.19E-129 wgd
Cpe04g01589 Cpe-Chr4:12386492 Cpe09g00555 Cpe-Chr9:3825149 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01589 Cpe_Chr04 FPKM 7.726769 8.531608 12.895015 12.282586 6.503896 5.938181 7.393268 0.640939 0.537977 0.525701