Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01590 ATGGCTTCTACTTCTGCCACTTCTATTTTGAAACCCTTATCCAAGGCCGACCCTTGCCTTCTATCCCTGCCCTCTGTATTCACCTACAGAGCCCCACAGTCCTTTCTCTCTTTCCCTTCCAAGTTCATCCCCTTTCACCTTTCTTCCTCCCATTCCTCTGTCTTTTTCCCCTCAAAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAAGAAGGTTGGGAGGCTGAAGGCGAAGAGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGAGGAAGAAGAAGGGTCTTATGTTGAACCAAATGAAGATGCTAAGTTGTTTGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCAAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAACCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTTCGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTATAGATGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAGACCTAGGCGCAACTTCTGA 918 48.15 MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKKKPHLSSLIASVAQEDDTITIDQKLAGDEEGWEAEGEEVGGSEAEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLFDRDSGRSRGFGFVTMADETGMNDAIAALDGQSIDGRAIRVNVAEERPRRNF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12392068 12394970 + Cp4.1LG04g15880.1 Cpe04g01590 469152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01590 305 CDD RRM_HP0827_like 222 298 - -
Cpe04g01590 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Cpe04g01590 305 PANTHER RIBONUCLEOPROTEIN 1 83 - -
Cpe04g01590 305 PANTHER RIBONUCLEOPROTEIN 105 304 - -
Cpe04g01590 305 MobiDBLite consensus disorder prediction 86 107 - -
Cpe04g01590 305 Gene3D - 209 304 IPR012677 -
Cpe04g01590 305 Gene3D - 72 208 IPR012677 -
Cpe04g01590 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Cpe04g01590 305 SUPERFAMILY RNA-binding domain, RBD 215 303 IPR035979 GO:0003676
Cpe04g01590 305 SUPERFAMILY RNA-binding domain, RBD 123 215 IPR035979 GO:0003676
Cpe04g01590 305 CDD RRM_HP0827_like 128 205 - -
Cpe04g01590 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 198 IPR000504 GO:0003723
Cpe04g01590 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 293 IPR000504 GO:0003723
Cpe04g01590 305 PANTHER OS02G0815200 PROTEIN 105 304 - -
Cpe04g01590 305 PANTHER OS02G0815200 PROTEIN 1 83 - -
Cpe04g01590 305 SMART rrm1_1 222 295 IPR000504 GO:0003723
Cpe04g01590 305 SMART rrm1_1 128 201 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01590 - - - mcha:111006981 432.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01590 Cpe18g00878 CCT
Cpe04g01590 Cpe18g00878 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01107 Cpe-Chr1:6544125 Cpe04g01590 Cpe-Chr4:12392068 2.20E-06 dispersed
Cpe03g00183 Cpe-Chr3:903002 Cpe04g01590 Cpe-Chr4:12392068 8.20E-56 dispersed
Cpe03g01544 Cpe-Chr3:12017194 Cpe04g01590 Cpe-Chr4:12392068 1.54E-13 dispersed
Cpe04g01590 Cpe-Chr4:12392068 Cpe08g00361 Cpe-Chr8:2232891 3.58E-15 dispersed
Cpe06g00441 Cpe-Chr6:2547061 Cpe04g01590 Cpe-Chr4:12392068 4.94E-07 dispersed
Cpe13g00782 Cpe-Chr13:7086111 Cpe04g01590 Cpe-Chr4:12392068 1.84E-08 dispersed
Cpe18g00878 Cpe-Chr18:7994528 Cpe04g01590 Cpe-Chr4:12392068 1.19E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01590 Cpe_Chr04 FPKM 9.156863 10.257208 13.657683 11.354226 7.748947 5.774703 6.557488 0.756159 0.700614 0.825375