Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01594 ATGAGAATCCTCATGGGTGGGGTTACTTCTTCCATGGCTGCCAAATTCGCCTTCTTCCCTCCCAACCCACCCTCTTACAAGCTCCTCAAAGACCAACCCACTGGCCTCCTTCTCTTGGACCCTTTTCCCCACCGCGAAAATGTCGATGTCTGGAAGCTTCCCACTCGCAAAGGCACTGAGATCGTCGCTGTTTACATCCGCTACCCTATGGCTACTTCTACGCTTCTTTATTCCCATGGAAACGCCGCCGATGTTGGTCAGATGTACGAGCTTTTCATCGAGCTTAGCATCCATTTGCGCGTTAATCTTCTCGGGTACGATTATTCGGGATACGGGCAGTCCACGGGAAAGCCAAGCGAACACAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTTGAGGAGAAATATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCCGTGGGAAGTGGCCCGACTTTAGACCTTGCTGCACGTTTGCCCCGACTACGAGCAGTCGTTCTGCATAGTCCTATACTATCGGGATTAAGAGTCATGTATCCAGTGAAGCGCACGTACTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAATGCCCTGTGCTGGTAATTCATGGAACATCCGACGACGTCGTTGATTTCTCTCACGGTAAACATCTCTGGGAGCTATGTCAAGAGAAATACGAACCCTTATGGCTCAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCTGAATACATCAGGCACCTCAAGAAATTCGTATCCACCGTTGAGAGGTCGCCCTCACGAAGGAACGGTTCAAGGAAAAGCACAGACCGAATCGAGCAATCAAGAAGGAGCACGGATTGTTTCGAGGCCCCGAGAAGGAGCTCAGACAGGCGAGAGAAACCAAGGAAAAGCGTCGATAGGCTAGACAAATCAAGACCTCAAGGATACAAGTTTGACAACATTGAGAAGCTAGAGAAGCTAAAGATCTCAATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATACTACGAGAAACCGAGGAGAAGCATCGACCAACAGTTCGAAAGAGGTCGAAAGAGTGTGGATTGGTTGGATAGAATGCGCGCCGGAGGGCAATCGACTATGATCATGTCCCCAAACGAGATAGCAAACAATGCGATCAGGCACGCTCTCAGGGCGCTGCGCCAACGCCATCTAGTTGAAGAAGGTGCGCATGCTCCCGCTTTTCTCGCTCTCTCTCGGCCCATCATATCGCAGAGTTCGGAATGGAAAGAGAAAGCAGAGAAGCTGGAGTTGGAGCTTCAGCAATGTTACAAGGCTCAATCGCGATTGTCTGAGCAACTTGTGGTGGAAGTGGCTGAGGGTCGAGCTTCTAAATCTTCGATTGAGGAGAAAGATGCGACGATTGATAATCTGCAGCAGGAGTTAACTCGAGCCAGGGATGAATGCTCCCAGCTAAAGGCAGACTTAGAGATGAAAATTAAAGCCATGGAACTGGCTATATCTGAGAGCCAAGAACTTAAAGCACAGCTTGAAGCAATGACGATCAAAGCTAAGAATACAGAGGCTGAAAATAATATGTTGATTGACCGGTGGATGCTGCAAAAGATGAAGGATGCAGAACGCCTCAATGAGGCTAGTGGGTTAGAGAAACTTGCTCAGCAACAGGTCGATGGTGTGGTCCGTCAGAGCGAAGAGGGTGCTGAATACTTCGTAGAATCCACCGTACCCTCTGTATGCAAGCATAGTATCCGTGCGCATGAAGGGGGCTGTGGTACTATTTTGTTTGAAAACAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGAACCGTCAAAGTGTGGGATACAAATACTGGATCATTAAGTTCCACTTTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAGTTACCCATGATAATAGATCTGTCATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACGTTGGTTCTGGAAGGGTGCGCCATACGCTTACCGGTCACTCCGACAAAGTATGTGCTGTAGATGTAAGCAAAATCTCGAGCCGACATGTTGTGAGTGCTGCTTATGATCGCACCATCAAAATCTGGGATTTACAGAAGGGTTACTGCACTAAGACCCTCATTTTCCCCAGCAATTGCAATGCAGTTCGGTTCAGCATGGATGGACAGACCATTTGTTCTGGGCATATGGATGGAAATCTTCGGTTGTGGGATATCCAAACAGGAAAATTGCTCAGCGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACGATATTGACTAGCGGGAGAGATAACTTGCATAATTTATTCGATATTCGGTCTTTGGAAGTCTGCGGGACATTACGGGCATCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGCCCAGATGACAACCATGTTGCTGCTGGTTCCGCTGATGGATCTGTCCATGTCTGGTCAATATCAAAGCATGATATTGTGAGCACTCTGAAAGAGCACACTGCCTCTGTTCTGTGTTGTTCATGGAGTGGGCTTGGGAAACCCCTTGCGTCTGCGGACAGAAATGGAATTATATTTACATGGAACTGA 2634 47.23 MRILMGGVTSSMAAKFAFFPPNPPSYKLLKDQPTGLLLLDPFPHRENVDVWKLPTRKGTEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKHLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERSPSRRNGSRKSTDRIEQSRRSTDCFEAPRRSSDRREKPRKSVDRLDKSRPQGYKFDNIEKLEKLKISIDQVERSRRSVEYYEKPRRSIDQQFERGRKSVDWLDRMRAGGQSTMIMSPNEIANNAIRHALRALRQRHLVEEGAHAPAFLALSRPIISQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIDNLQQELTRARDECSQLKADLEMKIKAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSGKLISGGQDRTVKVWDTNTGSLSSTLHGCLGSVLDLAVTHDNRSVIAASSSNNLYAWDVGSGRVRHTLTGHSDKVCAVDVSKISSRHVVSAAYDRTIKIWDLQKGYCTKTLIFPSNCNAVRFSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12408763 12415131 + Cp4.1LG04g15930.1 Cpe04g01594 469156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01594 877 Gene3D alpha/beta hydrolase 50 263 IPR029058 -
Cpe04g01594 877 SUPERFAMILY alpha/beta-Hydrolases 4 264 IPR029058 -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 626 - -
Cpe04g01594 877 Coils Coil 425 452 - -
Cpe04g01594 877 Pfam WD domain, G-beta repeat 712 747 IPR001680 GO:0005515
Cpe04g01594 877 Pfam WD domain, G-beta repeat 814 835 IPR001680 GO:0005515
Cpe04g01594 877 Pfam WD domain, G-beta repeat 669 706 IPR001680 GO:0005515
Cpe04g01594 877 Pfam WD domain, G-beta repeat 585 621 IPR001680 GO:0005515
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 630 IPR001680 GO:0005515
Cpe04g01594 877 ProSitePatterns Trp-Asp (WD) repeats signature. 734 748 IPR019775 -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 715 IPR001680 GO:0005515
Cpe04g01594 877 PANTHER ALPHA/BETA-HYDROLASE SUPERFAMILY PROTEIN 5 320 - -
Cpe04g01594 877 Pfam Autophagy protein 16 (ATG16) 424 549 IPR013923 -
Cpe04g01594 877 ProSitePatterns Trp-Asp (WD) repeats signature. 693 707 IPR019775 -
Cpe04g01594 877 Coils Coil 124 144 - -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 757 792 IPR001680 GO:0005515
Cpe04g01594 877 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 5 320 - -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 816 844 IPR001680 GO:0005515
Cpe04g01594 877 Coils Coil 467 536 - -
Cpe04g01594 877 CDD WD40 585 877 - -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 756 IPR001680 GO:0005515
Cpe04g01594 877 MobiDBLite consensus disorder prediction 266 317 - -
Cpe04g01594 877 Gene3D - 464 538 - -
Cpe04g01594 877 Gene3D - 721 877 IPR015943 GO:0005515
Cpe04g01594 877 SUPERFAMILY WD40 repeat-like 581 877 IPR036322 GO:0005515
Cpe04g01594 877 Pfam Serine aminopeptidase, S33 74 178 IPR022742 -
Cpe04g01594 877 Gene3D - 577 720 IPR015943 GO:0005515
Cpe04g01594 877 PRINTS G protein beta WD-40 repeat signature 693 707 IPR020472 -
Cpe04g01594 877 PRINTS G protein beta WD-40 repeat signature 734 748 IPR020472 -
Cpe04g01594 877 PRINTS G protein beta WD-40 repeat signature 608 622 IPR020472 -
Cpe04g01594 877 ProSitePatterns Trp-Asp (WD) repeats signature. 608 622 IPR019775 -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 845 877 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 624 663 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 792 835 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 709 747 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 582 621 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 666 706 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 750 789 IPR001680 GO:0005515
Cpe04g01594 877 SMART WD40_4 838 877 IPR001680 GO:0005515
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 673 710 - -
Cpe04g01594 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 845 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01594 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 892.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00993 Cpe-Chr3:8118055 Cpe04g01594 Cpe-Chr4:12408763 1.04E-134 dispersed
Cpe04g01594 Cpe-Chr4:12408763 Cpe13g00994 Cpe-Chr13:8213304 5.22E-157 dispersed
Cpe10g00519 Cpe-Chr10:3042569 Cpe04g01594 Cpe-Chr4:12408763 1.50E-08 dispersed
Cpe01g02316 Cpe-Chr1:19506421 Cpe04g01594 Cpe-Chr4:12408763 3.57E-142 wgd
Cpe18g00881 Cpe-Chr18:8010732 Cpe04g01594 Cpe-Chr4:12408763 0 wgd
Cpe03g00602 Cpe-Chr3:3616978 Cpe04g01594 Cpe-Chr4:12408763 4.94E-08 wgd
Cpe04g00513 Cpe-Chr4:5653505 Cpe04g01594 Cpe-Chr4:12408763 7.39E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01594 Cpe_Chr04 FPKM 0.485268 1.739699 14.703593 11.565223 96.669487 88.792358 88.589111 13.100231 14.291887 13.220079