Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01603 ATGGCACCGACTGTTCCTATTGAGTTTGCTGGACAGAAGGAATCGAGAAAGTACTCACTTTCACAGGTAATGGGGAAATCGAGGAAATATTCCAAAGGTCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTAGGGAGCTCTGGACGAATGGATACTGGAATCTCATCTCTAGATGATCCACGGGCCTTCAAGAGAAAGCGTGTTAGTATGAATGCAAATGGTTATGATTGTTTCGGTGCTCCTCTTCAAGTTTTTTCTATATCATCATTGTCTCGATCTGAAAGGAAAGGTTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTCCGAGTTCTGCAAAAGAAAGCTTCTGACGTTAGTTCGAGTTTGGCTGTTTCATCGTCGAGTAATATTCAGAGTTATAGTGATCAGCACAGGGGAGTTCCTCCAGAGACTTCTAATAGGTTGTCCGAGGTATCGGTTCCTCCTGCTAAAAAGCTAGTGCCCTCTGGGCGCAATGGCCCTTCAGCTGTAAGAAGCTCATCTGGGCGGTTTGAGTCGGTTAAACCAGCTGTTGTATCTGCTTCCTCGACAGCATTGTTATTGAAACAATGTGAACAGCTGCTGCCTCGCTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTTGATGTGGTCAAGTTGAATATTCCAGATTATTTCACTGTTATAAAGCATCCAATGGATCTGGGCACTGTGAAGTCGAAGATTACTGCAGGAGAATACACACATCCATTGGATTTTGCTGCAGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCCGGGAATGACGTCCATGTCATGGCTAAGACCCTAAGTAAATATTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAACGTCAAGTATCTTCAGCCACTATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGTCACGTTCAAAAAAGACAAAAGTCCCTACTAATAGCCCTGATATTCAGCCAAACAGTGTGTCAAAAATCATGACTGACCAGGAGAAGCATAAACTGAGTGTGGAGTTGGAGGCGTTGCTGGGAGAATTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATCCTCTAGCGGGTGAGGAGGAGATTGAAATTGATATTGATACTCTTAGTGATGATACCTTGTTTGCATTGAAGAAGAAATTGGACGACTATATAATGGAGAAGCAGAAACGCACAACGGCTGAACCTTGTGTAGTGGAGCTTCGCAACGAATCAGGATTGAGCAATTCATCAATGCCACCATGTAGAGGAAATGGTCGGCTTGATGATGATGTAGACATTGTTGGTGGAAATGACCCTCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATGCAGTCCATAGAGAGAGTAAATGCAGTCATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCTCAGATAGTTTATCGGCGAGTGAATCAAATGCTGCTAAAGCATTAGATAGTGATGCGGCTCCAAAGGAAATTTTGTCTTCTGAAACAAATGTGGATCAGAAGCAATATGAAGTTGGTGATTTAGAAATTGGAAATTTTGAAGAAAATGGAATTGGTCTAGTTGAGCAATCTGCTCAGGGCAATACAAACACTACTGACACGGATAGCTACCAAGAGGAGGGGGAGGGTGCTCCATCCAAGAGGCAAGTCTCCCCTGACAGGCTATACCGTGCAGCTTTATTGAGAAACCGATTTGCCGACACGATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAGCGGGATCCTGAAAAAGTGCGAATGGAGAGGGAGGAACTTGAAAGACAGAAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCCAAAGCTGCAGAGGATGCTCACAGGAAGGCAGAAGCAGAAGCTGCGGCTGAAGCAAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAGGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCAAACGACGAGCAGCTACCGAACTTCACAGAGAAGTCAAGCCCAGAATATTCTCAGAATGGATATGGCAGTTTCAAGCTTAAAGGTAGTAATCCCTTGGAACAACTTGGCTTGTACATGAAGGTGGATGATGAAGAGGAAGAGGATGTAAATGAACCACCACCACCACCCCAGAGTGTTAACAAGCCAGCAAATGATGTTGAAGACGGTGAAATCAATTAG 2340 43.68 MAPTVPIEFAGQKESRKYSLSQVMGKSRKYSKGLSFGFVPDYRHAVETVGESEGLGSSGRMDTGISSLDDPRAFKRKRVSMNANGYDCFGAPLQVFSISSLSRSERKGLEIRLKLELEQVRVLQKKASDVSSSLAVSSSSNIQSYSDQHRGVPPETSNRLSEVSVPPAKKLVPSGRNGPSAVRSSSGRFESVKPAVVSASSTALLLKQCEQLLPRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHVMAKTLSKYFEVRWKTIEKKLPVTTEEQRQVSSATIVHKEAESTLPVSRSKKTKVPTNSPDIQPNSVSKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNPLAGEEEIEIDIDTLSDDTLFALKKKLDDYIMEKQKRTTAEPCVVELRNESGLSNSSMPPCRGNGRLDDDVDIVGGNDPPVSSYPPIEIEKDAVHRESKCSHSSSSSSESDSGSDSLSASESNAAKALDSDAAPKEILSSETNVDQKQYEVGDLEIGNFEENGIGLVEQSAQGNTNTTDTDSYQEEGEGAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQKREEKARLQAEAKAAEDAHRKAEAEAAAEAKKKRELDREAARQALLKMERTVDINENSQFMEDLEMLRASNDEQLPNFTEKSSPEYSQNGYGSFKLKGSNPLEQLGLYMKVDDEEEEDVNEPPPPPQSVNKPANDVEDGEIN 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12476972 12485596 - Cp4.1LG04g16120.1 Cpe04g01603 469165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01603 779 MobiDBLite consensus disorder prediction 553 590 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 493 518 - -
Cpe04g01603 779 Gene3D - 191 324 IPR036427 GO:0005515
Cpe04g01603 779 PANTHER TRANSCRIPTION FACTOR GTE8 25 759 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 615 675 - -
Cpe04g01603 779 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Cpe04g01603 779 MobiDBLite consensus disorder prediction 558 578 - -
Cpe04g01603 779 Pfam Bromodomain extra-terminal - transcription regulation 360 420 IPR027353 -
Cpe04g01603 779 SMART bromo_6 198 308 IPR001487 GO:0005515
Cpe04g01603 779 MobiDBLite consensus disorder prediction 141 163 - -
Cpe04g01603 779 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 709 779 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 444 539 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 331 352 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 141 186 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 337 352 - -
Cpe04g01603 779 Gene3D - 355 431 IPR038336 -
Cpe04g01603 779 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Cpe04g01603 779 SUPERFAMILY Bromodomain 193 311 IPR036427 GO:0005515
Cpe04g01603 779 PRINTS Bromodomain signature 220 233 IPR001487 GO:0005515
Cpe04g01603 779 PRINTS Bromodomain signature 236 252 IPR001487 GO:0005515
Cpe04g01603 779 PRINTS Bromodomain signature 252 270 IPR001487 GO:0005515
Cpe04g01603 779 PRINTS Bromodomain signature 270 289 IPR001487 GO:0005515
Cpe04g01603 779 PANTHER TRANSCRIPTION FACTOR GTE10 25 759 - -
Cpe04g01603 779 Coils Coil 631 676 - -
Cpe04g01603 779 MobiDBLite consensus disorder prediction 709 732 - -
Cpe04g01603 779 CDD Bromo_plant1 205 303 IPR037377 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01603 - - - csv:101217420 1174.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01603 Cpe-Chr4:12476972 Cpe01g00374 Cpe-Chr1:2149590 1.05E-51 dispersed
Cpe18g00889 Cpe-Chr18:8038918 Cpe04g01603 Cpe-Chr4:12476972 0 wgd
Cpe03g00613 Cpe-Chr3:3670496 Cpe04g01603 Cpe-Chr4:12476972 0 wgd
Cpe04g00502 Cpe-Chr4:5587411 Cpe04g01603 Cpe-Chr4:12476972 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01603 Cpe_Chr04 FPKM 18.756615 20.223129 3.594336 5.358363 9.014004 9.645315 9.363367 0.440791 0.213462 0.470066