Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01606 ATGGGAGAAGCTCACGCTATGTGTAACATCGGTGTGGCGCCCGCTAAATTGAACAAAGTTGTCTTAGCGTATAGCGGTGGCTTGGACACTTCTGTTATCGTACCATGGTTGAGGGAGAACTATGGGTGTGAGGTGGTTTGCTTCACTGCTGATGTTGGGCAAGGAGTGATGGAATTGGATGGTTTGGAGGCAAAAGCGAAAGCAAGTGGTGCCTGTCAATTAGTTGTGAAAGACCTGAGGGAGGAATTTGTGGAAGAATACGTGTTTCCTTGCTTGCGAGCTGGTGCCGTTTATGAGAGGAAATACTTGCTTGGAACTTCCATGGCCCGCCCTGTCATCGCCAAGGCCATGGTGGATGTCGCCAGAGAAGTTGGCGCCGATGCTGTTGCTCATGGTTGCACAGGGAAAGGAAATGATCAGGTACGATTTGAACTCACGTTCTTTGCTCTGAACCCCAAACTTCGCGTTATAGCTCCCTGGAGAGAATGGGACATTACAGGAAGAGAAGATGCCATTGAGTATGCGAAGAAGCACAACGTGCCCGTCCCCGTCACGAAGAAATCGATATACAGTCGGGACCGGAATATTTGGCACCTTAGTCATGAGGGTGACATTTTGGAAGATCCTGCCAATGAGCCAAAGAAGGACATGTTCATGATGTCCGTCGATCCCGAGGATGCACCGAACCAACCCGAATATGTTGAGATTAATTTTGTCTCAGGACTCCCTGTTGCTGTTAACGGGAAAAAGCTGTCACCAGCTTCCCTTCTCGACGAGCTCAACAAGATCGGTGGGAAACATGGCATTGGCCGAGTCGACATGGTCGAAAATCGTCTCGTTGGCATGAAGAGCCGTGGTGTATACGAAACACCAGGAGGAACCATCCTATTCACAGCTGCACGTGAGCTGGAGTCCTTAACACTCGACCGCGAGACAATTCAAGTCAAGGACTCACTGGCCCTCAAATACGCGGAGCTGGTGTATGCAGGGCGATGGTTCGACCCACTCCGGAAAGCCATGGACGGTTTCATGGAGACGATAACTGCAACAAGCACAGGAACGGTCACACTCAAACTGTACAAAGGCTCCGCAGCCGTGGCCAGGCGCGAAAGCCCGAACAGCCTGTACAGGCAAGACATATCGTCATTTGAAAACGGGGATGTGTACAACCAAGCTGATGCTGCCGGATTCATCCATCTGTACGGGCTCCCAACCAGAGTCCGAGCAATGCTTGAACAAGGAATGTAA 1248 50.8 MGEAHAMCNIGVAPAKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGVMELDGLEAKAKASGACQLVVKDLREEFVEEYVFPCLRAGAVYERKYLLGTSMARPVIAKAMVDVAREVGADAVAHGCTGKGNDQVRFELTFFALNPKLRVIAPWREWDITGREDAIEYAKKHNVPVPVTKKSIYSRDRNIWHLSHEGDILEDPANEPKKDMFMMSVDPEDAPNQPEYVEINFVSGLPVAVNGKKLSPASLLDELNKIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFTAARELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRKAMDGFMETITATSTGTVTLKLYKGSAAVARRESPNSLYRQDISSFENGDVYNQADAAGFIHLYGLPTRVRAMLEQGM 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12501655 12504431 - Cp4.1LG04g16170.1 Cpe04g01606 469168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01606 415 Hamap Argininosuccinate synthase [argG]. 17 413 IPR023434 GO:0004055
Cpe04g01606 415 ProSitePatterns Argininosuccinate synthase signature 1. 23 31 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cpe04g01606 415 Gene3D HUPs 19 188 IPR014729 -
Cpe04g01606 415 CDD Argininosuccinate_Synthase 20 404 IPR023434 GO:0004055
Cpe04g01606 415 Pfam Arginosuccinate synthase 21 407 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cpe04g01606 415 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 219 - -
Cpe04g01606 415 TIGRFAM argG: argininosuccinate synthase 19 408 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cpe04g01606 415 ProSitePatterns Argininosuccinate synthase signature 2. 132 143 IPR018223 GO:0004055|GO:0005524|GO:0006526
Cpe04g01606 415 PANTHER ARGININOSUCCINATE SYNTHASE 16 413 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cpe04g01606 415 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 187 413 IPR024074 GO:0004055
Cpe04g01606 415 Gene3D Single helix bin 379 414 - -
Cpe04g01606 415 Gene3D Argininosuccinate synthetase, chain A, domain 2 79 367 IPR024074 GO:0004055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01606 K01940 argG, ASS1; argininosuccinate synthase [EC:6.3.4.5] - csv:101215982 774.622
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01606 Cpe09g00969 CCT
Cpe04g01606 Cpe20g00313 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01606 Cpe-Chr4:12501655 Cpe09g00969 Cpe-Chr9:8645045 0 dispersed
Cpe18g00893 Cpe-Chr18:8059606 Cpe04g01606 Cpe-Chr4:12501655 0 wgd
Cpe20g00313 Cpe-Chr20:1770929 Cpe04g01606 Cpe-Chr4:12501655 6.14E-121 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g140 . . . . . . . Bma12g01077 Cmo13g00830 Cmo18g00206 . Cma11g00044 Car10g00059 Car11g00039 Sed08g2445 Cpe20g00313 Cpe04g01606 Bhi02g00535 Tan09g2357 Cmetu12g1017 . Hepe09g0059 . . Cla06g01732 Cam06g1923 Cec06g1973 Cco06g1977 Clacu06g1879 Cmu06g1821 Cre06g2636 Cone2ag0966 Cone16ag0026 . . Lsi02g00491 Csa01g00954 Chy12g01178 Cme12g01598 . Blo15g00214 . . . . . . . Cmo10g00068 Cmo11g00044 Cma13g00797 . Car13g00646 Car18g00222 Cpe09g00969 . . . . . . . . . . . . . . . Lsi06g01632 Csa01g00067 Chy02g02653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01606 Cpe_Chr04 FPKM 0.161935 0.277475 0.109526 0.150072 1.105429 0.695797 0.462398 0.195906 0.111103 0.150875