Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01607 ATGACAAGCCCGATATCCGTGAGAGTCGAAGAAAAATCTTTAGCCCGCTATCTCCCTCCTCCATTTCCCGCTCCAAGGCTCTGCAGCTACCATTTCGAGTTCACTCCGGAACCTCCCCAGCATATGCAATTGGAGTTTTTGGGCGGTTCTTCCGTCCTTAGGTCGCCACATTTAGGTCCTTACAGGCACACGATGGCAGCCTTTGGTGCTCTTTCACTATGTCCCTGCAGCCCTCTGCCACGCCCACGTACCATTTATTGTTGCAGTGGTACTCCTAAAGTTTTAGGCAATAATGTCTCTAGAGTACACCGCAAAAGACCGGGAGGATTAGAAGGTGCTAGAAAAAGCATGGAAGATTCTGTTAAACGCAAGATGGAACAGTTTTATGAAGGTTCAGATGGTCCGCCCCTCCGTGTTCTTCCAATTGGCGGCCTTGGTGAAATTGGGATGAATTGTATGCTTGTTGGGAATTATGACCGTTACATTTTGATTGATGCTGGTGTCATGTTTCCTGACCACGATGAGCTTGGTGTTCAGAAAATTATACCCGATACCACATTCATCAGAAGATGGAGTCACAAAATTGAAGCTGTTGTCATTACACATGGTCATGAAGATCACATTGGTGCGTTGCCATGGGTAATTCCAGCTTTGGATTCCCATACACCAATCTACGCTTCATCCTTTACAGTGGAGCTAATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTAGACTTAAGGTGTTTAAGATGAGAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCTGATTGTTGTGGATTGGTTCTTCGATGTGCTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAGTCCCCATTGGATGGTAAAGTCTTTGATCGAGAAACTTTGGAAGAATTATCAAAAGAAGGAGTTACTCTTATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACGATTAGTGAGTCTGTGGTGGCAGATGCTCTTTTAAGACGTATCTCTGCAGCTAAAGGAAGGGTCATCACGACTCAATTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGGATGTCTTTAAGGACATATCTGGAGGCAGCCTGGAAGGATGGAAAGGCACCAATTGACCCATCGACCTTGGTAAAAGTGGAGGACATTGAAGCCTATGCACCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCCCTAAATCTTGCATCTTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGATATGATTTTGTATTCGGCCAAGGTTATTCCTGGTAATGAATCTAGAGTGATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTGCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAATACTACAAATTGTTAAACCGCAGCATTTTTTACCCATTCACGGAGAGCTTTTATTCCTTAAGGAGCATGAGCTGCTGGGCCGGTCGACAGGCATCCGACACACAACTGTGATTAAAAATGGAGAAATGCTTGGAGTATCTCATTTGAGAAACAGAAGAGTTTTATCCAATGGTTTCACCTCTCTCGGGAAGGAGAATTTACAGTTGAAGTATAGTGATGGTGATAAAGCATTTGGATCCTCATCTGAGCTCTTTGTTGACGAGAGACTAAAGATTGCAACAGATGGCATAATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTATAGACGGTTTAAATGAGACTGGCATCAAAGGAAAACTAAGAATCACTACTCGATGCTTATGGCTCGACAAGGGGAAGCTTTTAGATGCACTTCACAAAGCCGCTCATGCAGCACTTTCAAGTTGCCCCGTAAATTGTCCTCTAGCTCACATGGAAAGAACTGTGTCTGAACTTTTGAAGAAGATGGTTAGAAAATACAGTGGTAAGAGGCCTGAAGTCATAGTCTTGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAACAGCTTGGTAGAAGGCTTTCAGGGAAGTCCGATACTAGATTCGGGATGTCAGCACTGAGAAAAGCAGTTGATGGACAGCCAACTAAGAGCCACTTAAACGGCATAAGACCAGATGGAAATGACGATTTGCATTCTGAGGATAACTCAAGTCAGGAGTCCCAAGGTTATTACATTGAACCTGGAAGCCTACTTCCTGAAGAAGACTACAATTCCTCAAACTCCAACTTGACAGAGACAGAGTCCTCTGGTAACGAGGGTTTGGAGGATTTCTGGAGACCGTTTATCACGCCATCCTCTCCTGTTAATGAATTGGTGAAGGAGGATGAAGGTTCTGTTCAACCATCAAAAAATACTCTGGAGATTTCAAACGGAGGTGAAGAAGGTAGTGATGAGGGGTCACTGAAAACATCAAATTCTTCGGAGAAGCCTTTGAAGCCTGTTAAAAGCAATAAATGGAAACCTGAGGAGATGAAGAGACTTATAAAATTACGTGGCCAATTGCATGCCAGGTTTCAAGTTCCCAAGGGACGAATGGCATTATGGGAAGAGATATCCAGATCTATGTTGGGTGATGGAATGAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATATGAGGATAGCAAAAGTGAAAAGACAATCAAGAAAAGTTGGCCATACTTCGAGGAAATGGACGCCATATTGTCTGATTCAGAGGCAGTAGCATCAAAATAA 2841 43.44 MTSPISVRVEEKSLARYLPPPFPAPRLCSYHFEFTPEPPQHMQLEFLGGSSVLRSPHLGPYRHTMAAFGALSLCPCSPLPRPRTIYCCSGTPKVLGNNVSRVHRKRPGGLEGARKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGVMFPDHDELGVQKIIPDTTFIRRWSHKIEAVVITHGHEDHIGALPWVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMRKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKVEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHAYRGELEEILQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGKENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSIDGLNETGIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLKKMVRKYSGKRPEVIVLAVENPGGVLSEQLGRRLSGKSDTRFGMSALRKAVDGQPTKSHLNGIRPDGNDDLHSEDNSSQESQGYYIEPGSLLPEEDYNSSNSNLTETESSGNEGLEDFWRPFITPSSPVNELVKEDEGSVQPSKNTLEISNGGEEGSDEGSLKTSNSSEKPLKPVKSNKWKPEEMKRLIKLRGQLHARFQVPKGRMALWEEISRSMLGDGMNRSPGQCKSLWASLVQKYEDSKSEKTIKKSWPYFEEMDAILSDSEAVASK 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12505583 12517842 + Cp4.1LG04g16060.1 Cpe04g01607 469169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01607 946 Pfam Myb/SANT-like DNA-binding domain 853 936 IPR044822 -
Cpe04g01607 946 ProSiteProfiles Myb-like domain profile. 847 911 IPR001005 -
Cpe04g01607 946 Pfam Beta-lactamase superfamily domain 160 296 IPR001279 -
Cpe04g01607 946 Gene3D - 141 553 IPR036866 -
Cpe04g01607 946 CDD GT1 853 918 - -
Cpe04g01607 946 MobiDBLite consensus disorder prediction 769 787 - -
Cpe04g01607 946 MobiDBLite consensus disorder prediction 725 854 - -
Cpe04g01607 946 CDD RNaseJ_MBL-fold 140 551 - -
Cpe04g01607 946 PANTHER RIBONUCLEASE J 57 946 - -
Cpe04g01607 946 MobiDBLite consensus disorder prediction 814 848 - -
Cpe04g01607 946 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 491 531 IPR011108 -
Cpe04g01607 946 SUPERFAMILY Metallo-hydrolase/oxidoreductase 137 551 IPR036866 -
Cpe04g01607 946 Gene3D - 855 915 - -
Cpe04g01607 946 Gene3D - 338 488 IPR042173 -
Cpe04g01607 946 SMART Lactamase_B_5a 149 346 IPR001279 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01607 - - - cpep:111780336 1686.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01607 Cpe-Chr4:12505583 Cpe05g00748 Cpe-Chr5:4588907 8.19E-10 dispersed
Cpe16g00177 Cpe-Chr16:3910921 Cpe04g01607 Cpe-Chr4:12505583 1.86E-06 dispersed
Cpe18g00894 Cpe-Chr18:8062912 Cpe04g01607 Cpe-Chr4:12505583 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49456 PF12706 Lactamase_B_2 2.90E-11 CL0381 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01607 Cpe_Chr04 FPKM 2.753299 2.141855 4.683328 4.096821 12.909801 11.999111 12.519553 3.161147 2.867585 2.487586