Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01610 ATGTCTGTGAATAACAACAACAATGCTAATAGTAACAGTGTGGTGAGGAATATTGGGGGAACTATGCCGGTGAATAACAGCCCTAGTAGTAACAATTTGGGGAGGAATATTGGGGCAGCCTCGCATTTTGGGAATTCAGGCATGGTTCAGCAAGCAAGGCCAATGAATCATCATTCTCAGTCACAGTCTCAAATGCACGGCGGGACGCATTTTTCAGGTCATTTTCAGTTATCCGAGCCACAGTCGCGTATAATGTCTCAGGTACAGTATACGCAGGCTCATGCACAGGCACAAGCTCAATCTGCTCATGCACAGTTTCAAGCTCGTACTCAACCCGTTCAGCTGCATAGTGCTAAGGCTAGTAATGTTACTATAACACCCTCTGTGTCAACACCTGGGACAGGGAGTTCTAAGAGGCCTACTCAGAAGCCACCTTCTAGGCCTCCAGGATCTTCTAACAGTAGCGCTAGTTCACCTTTTAAAACCATGGAGTTAACTCCAGCTGCTAGAAGAAAGAAGGCTAAGCTTCCTGAGAAACAAATACCCGATAAAGTTGCTGCTCTTCTGCCAGAATCTGCCATCTATACCCGACTGCTCGAAGTTGAGGGTCGGATAGATGCTGCTCTGGCAAGAAAGAAAAATGATATTCAAGAGTCTTTAAAGAATCCTTCGCGCATTCAGAAGACCCTACGGATCTATGTCTTCAATACGTTTGAAAATCAGAATCATAATAGTTCTGATCAGAAGAATGTAGAATCCCCTTCTTGGTCGCTTAAGATAACTGGGAGGATCTTGGAAGATGGAAAAGATCCCGCTATAGCTGGAGACATGCAGAATTATGATTCTACTTACCCAAAATTTTCATCTTTCTTCAAGAAAATCACTATATACTTAGACCAGAGCCTTTATCCAGATAACCACATAATTTTATGGGAGAGTTCTCGTTCTCCTGTTCTGCAAGAGGGATTTGAAGTGAAGAGAAAAGGAGATAAAGAATTTACTGCAGTGATAAGATTGGACATGAATTACATGCCTGAAAAATATCGTCTTTCACCTGCTTTATCAGATGTGCTTGGACTCGAAACAGACACCCGCTCAAGAATTATGGCTGCACTATGGCATTATGTGAAAGCTAACAAGTTGCAGAATTCAAATGATCCTTCTTTCTTCACATGTGATCCAGGTCTACGAAAAGTGTTTGGTGACGAGAAGGTCAAGTTTTCTATGGTATCTCAGAAGATATCGCAACATTTAATTCCTCCACCACCTATAAACTTACAGCATAGAGTTAAGATTTCGGGAAATTCTCCTGTTGGAACTACATGTTATGATGTCGTGGTGGATGTACCGTTTCCAATAGAAAAGCAAATGTCAGCATTCTTGGCAAACCTGGAGAAGCATAAAGATATAGATTCATGTGATGAATTGATTACTACTGCAGTAAAGAAGATTCAAGAGCACTATCAAAGGCGAGCTTTCTTTCTTGGCTTCAGTCAGTCTCCAGCAGAGTTTATCAATACGTTGATATCTTCTCAAACTAAGGATTTAAGGATCGTTGCTGGTGATGCTAGCCGTCTTGCAGAGAAAGAACGACACTCTAATTTTTACAGTCAATCCTGGTTGGAGGATGCTGTGTTTCGGTACCTGAACCGCAAACCTGCTGGAAGTGATGTTCCTGGAAGCGCTTAA 1689 42.16 MSVNNNNNANSNSVVRNIGGTMPVNNSPSSNNLGRNIGAASHFGNSGMVQQARPMNHHSQSQSQMHGGTHFSGHFQLSEPQSRIMSQVQYTQAHAQAQAQSAHAQFQARTQPVQLHSAKASNVTITPSVSTPGTGSSKRPTQKPPSRPPGSSNSSASSPFKTMELTPAARRKKAKLPEKQIPDKVAALLPESAIYTRLLEVEGRIDAALARKKNDIQESLKNPSRIQKTLRIYVFNTFENQNHNSSDQKNVESPSWSLKITGRILEDGKDPAIAGDMQNYDSTYPKFSSFFKKITIYLDQSLYPDNHIILWESSRSPVLQEGFEVKRKGDKEFTAVIRLDMNYMPEKYRLSPALSDVLGLETDTRSRIMAALWHYVKANKLQNSNDPSFFTCDPGLRKVFGDEKVKFSMVSQKISQHLIPPPPINLQHRVKISGNSPVGTTCYDVVVDVPFPIEKQMSAFLANLEKHKDIDSCDELITTAVKKIQEHYQRRAFFLGFSQSPAEFINTLISSQTKDLRIVAGDASRLAEKERHSNFYSQSWLEDAVFRYLNRKPAGSDVPGSA 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12523202 12526802 + Cp4.1LG04g16020.1 Cpe04g01610 469172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01610 562 Gene3D SWIB/MDM2 domain 340 426 IPR036885 -
Cpe04g01610 562 CDD SWIB_like 350 418 - -
Cpe04g01610 562 Pfam SWIB/MDM2 domain 347 418 IPR003121 -
Cpe04g01610 562 MobiDBLite consensus disorder prediction 101 141 - -
Cpe04g01610 562 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG 110 558 - -
Cpe04g01610 562 SUPERFAMILY SWIB/MDM2 domain 338 428 IPR036885 -
Cpe04g01610 562 MobiDBLite consensus disorder prediction 1 75 - -
Cpe04g01610 562 SMART swib_2 344 423 IPR019835 -
Cpe04g01610 562 MobiDBLite consensus disorder prediction 101 177 - -
Cpe04g01610 562 MobiDBLite consensus disorder prediction 148 162 - -
Cpe04g01610 562 ProSiteProfiles SWIB/MDM2 domain profile. 343 420 IPR003121 -
Cpe04g01610 562 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 110 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01610 K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D - csv:101222303 864.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01610 Cpe-Chr4:12523202 Cpe08g00471 Cpe-Chr8:3019225 8.41E-09 dispersed
Cpe03g00621 Cpe-Chr3:3713620 Cpe04g01610 Cpe-Chr4:12523202 0 wgd
Cpe04g00491 Cpe-Chr4:5521539 Cpe04g01610 Cpe-Chr4:12523202 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g121 . . . . . . . Bma12g01080 . . . Cma11g00039 . Car11g00035 . . Cpe04g01610 . . . . . . . . . . . . . . . . . Cone19ag0204 . . . . . . . . . . . . . . Cmo11g00040 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001873 2 3 1 1 2 2 3 1 2 2 2 1 3 2 1 3 1 5 3 2 2 2 1 3 3 1 2 5 3 2 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49457 PF02201 SWIB 7.10E-23 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01610 Cpe_Chr04 FPKM 46.262962 47.523178 28.753117 27.359755 39.781712 36.921875 38.410152 24.371168 25.036537 28.579296