Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01613 ATGGTGATGGCGGCAACTAGAGAGGAGAGTCCTAGAAGCCCAGAGGCGAAGGTGGGGATGCAAGTGGAAGATTTATGGGACGTTCAAGAGCCGCAGCTCAGTCCTACTGAGAAGCTTAATGCTTGTTTTGAAAGCATCCCTGTCTCTGCTTTTCCTCCTGCCCCTTTTGATCAAGGCATCCTTCTTATTTTTTTCCTTCCAAATCACTTTTGTATTTTGTTTGCATATTATTTGGCAATTGAGATAAGATCGGACAGCACTCTAGCTGAAGCTGTTCAAATTTTGGCCCAACATAAGATCCTCAGCGCCCCTGTGGTGGACGTTGATGCACCTGATCATGCTAGTTGGATTGATAGATACATTGGTGTTGTTGAGTTTGCTGGAATTGCTGTTTGGATTCTTCAGCAGTCGGAACCTCCATCCCCCAGAAGTCCCAGTGATGGAAGTGCTGTGGCTGCAGCAGCAAGTGGGGTGATATCTCCTGTTGAACAGCAGGTACTGGGCCCGGAATCAGCTGCAGCAACCTCGGGAAGCTTTTTCGAATGCTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTTCGAGACATCTCGGGGTCTTTCCGTTGGGCCCCGTTTCTTGCTTTGCAGACGACGAACTCGTTCTTGACCATGCTCTTACTGTTATCAAAGTACAAAATGAAGAGTGTACCAGTGGTGGACTTGGGGGTGGGAAAGATTGAAAACATCATCTCACAATCTGCTGTTATTCACATGTTAGCAGAATGTGCAGGGCTTCAATGGTTTGAACGTTGGGGAACAAAGACTCTGTCGGAGCTCGGTCTTCCCATGATGTCGCCCGCTTCTATTGTCAAGGTGTACGAGGATGAGCCCGTTCTACAAGCATTCAAACTTATGAGGAAGAAGAGGGTTGGAGGTGTCCCTGTTATTGAAAGGGGTGGAAACAAGGCAATGGGCAATATTAGCTTAAGAGATATCCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTGCAGGTCGATAACGGCGAAAAACTTTCTGACAGCAGTTAGAAGCTACTTAGAGAAGCACGACCAGGTCTCTCCAATGCTGACGAACATGATTACGTGCAAGAAGGACGACACAATAAAGCATCTGATTTTGATGCTCGACTCCAAGAAGATTCACCGCGTGTATGTAGTCAACAGCGATGGTAATCTGCAAGGAGTTATCACTCTTAGAGACATAATCTCGAGGTTAGTCCACGAACCCCACGGCTACTTTGGCGATTTCTTCGATGGTGTTCTGCCATTGCCTCAGGATAGTCGGGTTTGA 1317 47.0 MVMAATREESPRSPEAKVGMQVEDLWDVQEPQLSPTEKLNACFESIPVSAFPPAPFDQGILLIFFLPNHFCILFAYYLAIEIRSDSTLAEAVQILAQHKILSAPVVDVDAPDHASWIDRYIGVVEFAGIAVWILQQSEPPSPRSPSDGSAVAAAASGVISPVEQQVLGPESAAATSGSFFECLTSSELYKSTQVRDISGSFRWAPFLALQTTNSFLTMLLLLSKYKMKSVPVVDLGVGKIENIISQSAVIHMLAECAGLQWFERWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKRVGGVPVIERGGNKAMGNISLRDIHFLLTAPEIYHDCRSITAKNFLTAVRSYLEKHDQVSPMLTNMITCKKDDTIKHLILMLDSKKIHRVYVVNSDGNLQGVITLRDIISRLVHEPHGYFGDFFDGVLPLPQDSRV 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12534635 12540105 + Cp4.1LG04g16050.1 Cpe04g01613 469175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01613 438 SUPERFAMILY CBS-domain pair 80 254 IPR046342 -
Cpe04g01613 438 CDD CBS_pair_SF 283 411 - -
Cpe04g01613 438 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 79 438 - -
Cpe04g01613 438 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 59 - -
Cpe04g01613 438 Pfam CBS domain 364 415 IPR000644 -
Cpe04g01613 438 Pfam CBS domain 278 326 IPR000644 -
Cpe04g01613 438 SMART cbs_1 205 254 IPR000644 -
Cpe04g01613 438 SMART cbs_1 367 415 IPR000644 -
Cpe04g01613 438 SMART cbs_1 282 331 IPR000644 -
Cpe04g01613 438 SMART cbs_1 78 134 IPR000644 -
Cpe04g01613 438 SUPERFAMILY CBS-domain pair 269 424 IPR046342 -
Cpe04g01613 438 Gene3D - 72 259 IPR046342 -
Cpe04g01613 438 Gene3D - 263 417 IPR046342 -
Cpe04g01613 438 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 79 438 - -
Cpe04g01613 438 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 8 59 - -
Cpe04g01613 438 ProSiteProfiles CBS domain profile. 278 339 IPR000644 -
Cpe04g01613 438 ProSiteProfiles CBS domain profile. 364 422 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01613 - - - cmax:111495538 763.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01613 Cpe-Chr4:12534635 Cpe09g00157 Cpe-Chr9:913931 1.58E-11 dispersed
Cpe18g00899 Cpe-Chr18:8084718 Cpe04g01613 Cpe-Chr4:12534635 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01613 Cpe_Chr04 FPKM 5.688193 5.539256 4.363849 4.107523 8.476392 7.358895 8.510956 3.176565 2.6572 2.675324