Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01617 ATGTCATCAATGGCGGCGGCTACTCACCCCTGCGCTTCCAAATCCTTCTCCAAATCCTCCTCCTTCGCTCTTCCTAAACCCTTCTCCAAATTCCATTTTTCATTTTCTCCTCTTCCTCACAATCCCACTTTCCCCCGCCCTCTTCGCATCTGTACCAGCTCTCTTTCCAACCCTTCCCCCAAGCCCTCCTCCACCGCCGCCTCTGCCACTTCCGTCGAAACTTCCGTCATCTCCCCTGAGATTTTCGTCTCCCGATTCGCTCCCGATGAGCCGAGGAAAGGCGCCGATATCCTCGTCGAGGCTCTCGAGCGCCAAGGTGTTACCAATGTCTTCGCTTACCCCGGCGGCGCGTCTATGGAGATCCACCAGGCCCTCACGCGATCTTCGACCATCCGTAACGTTCTCCCCCGTCACGAGCAGGGTGGCGTCTTCGCCGCGGAGGGATACGCTCGGTCCTCCGGCCTTCCCGGCGTTTGCATTGCAACTTCCGGCCCTGGCGCCACCAATCTGGTCAGTGGACTCGCTGACGCCCTACTCGATAGCGTTCCCATGGTAGCAATTACAGGGCAAGTTCCGAGGAGAATGATCGGTACCGATGCGTTCCAGGAAACTCCCATTGTTGAGGTAACACGCTCTATTACAAAGCACAACTATCTGGTTCTTGATGTAGAAGACATTCCTAGGATCGTGAGCGAGGCATTTTTCCTCGCAATTTCTGGTCGACCTGGTCCTGTTCTTATTGATATACCTAAAGACGTTCAGCAACAGCTCGCGGTTCCCAATTGGAATCAGCCCATGAAATTACCTGGTTACTTGTCTAGGCTACCTAAGCCTCCCATGGATTACCATTTGGAACAAATTGTGCGATTAATCTCTGAATCGAAGAAGCCTGTTCTGTACGTGGGTGGGGGGTGTTTGAATTCATCGGTGGAGTTGCGGCAGTTCGTCAAGCTCACTGGGATTCCGGTGGCCAGCACTCTAATGGGCCTTGGGGCTTTTCCTTGCTCCGATGATTTGTCTCTGCAAATGCTGGGAATGCACGGGACAGTTTATGCTAACTATGCTGTGGATAAATCTGACCTGTTGCTTGCGTTTGGAGTGAGATTTGATGACCGCGTGACAGGGAAGCTTGAGGCCTTTGCGAGTCGGGCGAAAATTGTTCATGTGGATATTGATTCGGCCGAGATTGGGAAGAACAAGCAGCCCCATGTATCAGTCTGCAGCGACGTGAAGTTAGTCCTGCAGGGAATGAATCGTTTACTTGAGAATTCTGAGAAGCTTCACTTCGATTTCTCTGCGTGGAGAGAAGAGCTGAATGAGCAGAAATCGAAATATCCTTTGACTTTCAAGACATTTGATGAGGCCATTCCTCCACAGTATGCAATTCAAGTTCTTGATGAGCTAACCAACGGTGAGGCCATCATAAGCACAGGGGTGGGGCAGCATCAAATGTGGGCAGCTCAGTTCTACAAGTACAAGAAGCCACGCCAGTGGCTAACCTCCGGTGGTTTAGGTGCGATGGGCTTTGGACTGCCTGCAGCCATGGGGGCAGCAGTTGCAAATCCTGGCGCGGTTGTCGTTGACATCGATGGAGATGGTAGTTTCATGATGAACATCCAAGAGCTGGCCACGATCAGTGTCGAGAAACTTCCAGTGAAGATCCTACTGCTGAACAACCAGCATCTGGGCATGGTTGTGCAGTGGGAGGATCGGTTCTACAAAGCCAACAGAGCTCACACGTACCTGGGAGATCCATCAAATGAGTCTGAGATATTCCCGAACATGTTGAAGTTTGCAGAGGCGTGCGGGGTGCGGGCGGCACGGGTGACAAAGAGGGCAGATTTAAGAGCAGCAATAAAGAAGATGCTGGAGAGCGAAGGGCCTTACTTGTTGGACGTGATTGTACCGCATCAGGAACATGTGCTGCCGATGATTCCCAGTGGTGGTGCTTTCAAAGATGTGATCACAGAGGGAGATGGAAGATCCAAATACTAA 1995 51.88 MSSMAAATHPCASKSFSKSSSFALPKPFSKFHFSFSPLPHNPTFPRPLRICTSSLSNPSPKPSSTAASATSVETSVISPEIFVSRFAPDEPRKGADILVEALERQGVTNVFAYPGGASMEIHQALTRSSTIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRIVSEAFFLAISGRPGPVLIDIPKDVQQQLAVPNWNQPMKLPGYLSRLPKPPMDYHLEQIVRLISESKKPVLYVGGGCLNSSVELRQFVKLTGIPVASTLMGLGAFPCSDDLSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLEAFASRAKIVHVDIDSAEIGKNKQPHVSVCSDVKLVLQGMNRLLENSEKLHFDFSAWREELNEQKSKYPLTFKTFDEAIPPQYAIQVLDELTNGEAIISTGVGQHQMWAAQFYKYKKPRQWLTSGGLGAMGFGLPAAMGAAVANPGAVVVDIDGDGSFMMNIQELATISVEKLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSNESEIFPNMLKFAEACGVRAARVTKRADLRAAIKKMLESEGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRSKY 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12555056 12557050 - Cp4.1LG04g16100.1 Cpe04g01617 469179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01617 664 PANTHER ACETOLACTATE SYNTHASE 69 663 - -
Cpe04g01617 664 CDD TPP_AHAS 456 648 IPR039368 GO:0030976
Cpe04g01617 664 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 88 270 IPR029061 -
Cpe04g01617 664 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 69 663 IPR045229 -
Cpe04g01617 664 Gene3D - 284 447 - -
Cpe04g01617 664 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 93 656 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Cpe04g01617 664 CDD TPP_PYR_POX_like 96 251 - -
Cpe04g01617 664 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 456 656 IPR029061 -
Cpe04g01617 664 Gene3D - 81 275 - -
Cpe04g01617 664 SUPERFAMILY DHS-like NAD/FAD-binding domain 283 447 IPR029035 -
Cpe04g01617 664 Gene3D - 448 634 - -
Cpe04g01617 664 MobiDBLite consensus disorder prediction 51 70 - -
Cpe04g01617 664 ProSitePatterns Thiamine pyrophosphate enzymes signature. 515 534 IPR000399 GO:0000287|GO:0030976
Cpe04g01617 664 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 93 256 IPR012001 GO:0030976
Cpe04g01617 664 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 478 633 IPR011766 GO:0003824|GO:0030976
Cpe04g01617 664 Pfam Thiamine pyrophosphate enzyme, central domain 285 415 IPR012000 GO:0000287|GO:0030976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01617 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - csv:101213339 1171.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01617 Cpe18g00907 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01405 Cpe-Chr2:12265643 Cpe04g01617 Cpe-Chr4:12555056 5.51E-46 dispersed
Cpe03g00979 Cpe-Chr3:7903720 Cpe04g01617 Cpe-Chr4:12555056 3.66E-45 dispersed
Cpe04g01617 Cpe-Chr4:12555056 Cpe19g01056 Cpe-Chr19:7263018 1.33E-12 dispersed
Cpe18g00907 Cpe-Chr18:8119700 Cpe04g01617 Cpe-Chr4:12555056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01617 Cpe_Chr04 FPKM 4.985554 5.24439 1.043955 1.400324 5.704015 4.827461 4.690404 0.325645 0.064758 0.16462