Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01618 ATGCAGAGTTGTGTGTGTCTCTCACCCTTTAAATTTCCATCTTCACCACTTGAAAAATTCCTCACATTTTTGTTCCCCAAATCATCACTTCCTCCGATCTTTGTCATCACTCCATCCCACCATTCTCCCATTGAATCCCACCAGCATTTGGCTAAGCCACACTTGAACCTCCGCCTTTGCCGGTTGATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGAACAGGTTCTGATTCTGGTGTTTGTTTCCCTGCAGCTAAGGTTTCAGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAACTGCATGCATGCTTTGACTCTACATCTCAATAAACAA 987 52.89 MQSCVCLSPFKFPSSPLEKFLTFLFPKSSLPPIFVITPSHHSPIESHQHLAKPHLNLRLCRLMENNNQAQSSPYPPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQRTGSDSGVCFPAAKVSDDDPWRHDSNPSCFNCMHALTLHLNKQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12557973 12560833 - Cp4.1LG04g16200.1 Cpe04g01618 469180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01618 329 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 286 - -
Cpe04g01618 329 Pfam Core histone H2A/H2B/H3/H4 114 186 IPR007125 GO:0003677
Cpe04g01618 329 Gene3D Histone, subunit A 90 201 IPR009072 GO:0046982
Cpe04g01618 329 MobiDBLite consensus disorder prediction 67 88 - -
Cpe04g01618 329 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 63 286 - -
Cpe04g01618 329 SUPERFAMILY Histone-fold 96 195 IPR009072 GO:0046982
Cpe04g01618 329 MobiDBLite consensus disorder prediction 71 88 - -
Cpe04g01618 329 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01618 Cpe-Chr4:12557973 Cpe04g00147 Cpe-Chr4:1422317 3.63E-63 dispersed
Cpe18g00908 Cpe-Chr18:8122394 Cpe04g01618 Cpe-Chr4:12557973 8.57E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49458 PF00808 CBFD_NFYB_HMF 4.50E-17 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01618 - - cmax:111500215 370.548