Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01618 ATGCAGAGTTGTGTGTGTCTCTCACCCTTTAAATTTCCATCTTCACCACTTGAAAAATTCCTCACATTTTTGTTCCCCAAATCATCACTTCCTCCGATCTTTGTCATCACTCCATCCCACCATTCTCCCATTGAATCCCACCAGCATTTGGCTAAGCCACACTTGAACCTCCGCCTTTGCCGGTTGATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGAACAGGTTCTGATTCTGGTGTTTGTTTCCCTGCAGCTAAGGTTTCAGATGATGACCCATGGCGCCATGACAGCAACCCGTCCTGCTTCAACTGCATGCATGCTTTGACTCTACATCTCAATAAACAA 987 52.89 MQSCVCLSPFKFPSSPLEKFLTFLFPKSSLPPIFVITPSHHSPIESHQHLAKPHLNLRLCRLMENNNQAQSSPYPPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQRTGSDSGVCFPAAKVSDDDPWRHDSNPSCFNCMHALTLHLNKQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12557973 12560833 - Cp4.1LG04g16200.1 Cpe04g01618 469180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01618 329 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 63 286 - -
Cpe04g01618 329 Pfam Core histone H2A/H2B/H3/H4 114 186 IPR007125 GO:0003677
Cpe04g01618 329 Gene3D Histone, subunit A 90 201 IPR009072 GO:0046982
Cpe04g01618 329 MobiDBLite consensus disorder prediction 67 88 - -
Cpe04g01618 329 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 63 286 - -
Cpe04g01618 329 SUPERFAMILY Histone-fold 96 195 IPR009072 GO:0046982
Cpe04g01618 329 MobiDBLite consensus disorder prediction 71 88 - -
Cpe04g01618 329 MobiDBLite consensus disorder prediction 256 289 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01618 - - - cmax:111500215 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01618 Cpe-Chr4:12557973 Cpe04g00147 Cpe-Chr4:1422317 3.63E-63 dispersed
Cpe18g00908 Cpe-Chr18:8122394 Cpe04g01618 Cpe-Chr4:12557973 8.57E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 5.3e-88 321.2
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.4e-87 318.5
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 7.2e-53 204.5
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 7.2e-53 204.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.6e-52 203.4
Cpe04g00402 . 140 283 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 8.0e-52 201.1
Cpe04g00147 . 19 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.4e-53 206.8
Cpe18g00070 . 38 278 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.1 1.2e-52 203.8
Cpe04g00402 . 86 238 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.1e-49 193.0
Cpe15g00258 . 30 167 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 2.8e-49 192.6
Cpe18g00908 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.7e-43 171.0
Cpe04g01618 . 102 200 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.5e-42 169.5
Cpe04g00147 . 79 268 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 1.9e-60 229.6
Cpe18g00070 . 60 278 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.9 9.0e-58 220.7
Cpe15g00258 . 30 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 9.6e-52 200.7
Cpe18g00908 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.1e-51 199.5
Cpe04g00402 . 86 282 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.8e-51 199.1
Cpe04g01618 . 102 260 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.1e-50 197.2
Cpe18g00908 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 5.6e-38 154.8
Cpe04g01618 . 102 262 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 9.6e-38 154.1
Cpe18g00908 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.5e-80 295.8
Cpe04g01618 . 102 286 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 9.6e-80 293.9
Cpe04g00147 . 100 268 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 8.0e-50 194.5
Cpe15g00258 . 70 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.3e-49 193.0
Cpe04g00402 . 140 292 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.8 3.9e-49 192.2
Cpe18g00070 . 111 278 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 1.5e-48 190.3
Cpe04g00402 . 104 271 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.2e-64 243.4
Cpe15g00258 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 5.5e-62 234.6
Cpe04g00147 . 100 236 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 9.8e-51 197.2
Cpe18g00070 . 85 242 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.6 3.7e-50 195.3
Cpe04g01618 . 102 225 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe18g00908 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Cpe01g01183 CCT,ECH 19 298 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 8.4e-59 224.6
Cpe16g00834 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.3 6.2e-54 208.4
Cpe11g00366 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.2 6.2e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49458 PF00808 CBFD_NFYB_HMF 4.50E-17 CL0012 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01618 Cpe_Chr04 FPKM 4.236082 3.714994 12.738022 12.590372 2.530462 3.106266 2.566872 10.376174 9.837219 10.32835