Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe04g01621 | ATGGCGGACGTGATGCTGATGAAAGAGATCGAGGACACGGCTGGTCGCCTTGGGATAGATCTTTCCCAAGTTGATTTTGAGTCTATTCGTCTCCCTCCCGGCGAGGACTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTTCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGCCTATGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACATATTTTCGCTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTACCAGATGAGTGGGCTCCTCCTGAAAGTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTATGGATGAAAAAGCACGGGATCAGTTAGTTATTCGTTCTGGTTCTGATACTGAGGTCTTCTGGAATGATGCTAGACATTTAAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTATGTGCAGTGGTCCCCCTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCCACAGGTTAAGTTAATTGATTTTTCACCTGGTGAGAAATATCTGGTTACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTCATCAATATTTTTGATGTAAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCGGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATGGGGAAGAATGTAATTTCTGTCTATGAAACAGAGACTTTCTCCCTCATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACCGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTTGTGCAAATCCCGAGCAAAGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGACCGATATACAAAGACCAAGAAAAGCATATACACAGGGTTTGAACTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGTCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCCATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTAAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTTCTGGACGCTTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGACGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAGCTGCTGTATCGAGTCTTGAAGGACCATTTCTTTCAGTTCGCATGGCGGCCAAGACCACCATCCTTGTTGAGTGCGGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTGCTGAGCGAGCAGGACCGGGAGAAACGGAGAATGTTGAAGGAGGAGTGGGAGAAGTGGGTGAATGAATGGAAAAAATTGCATGAAGAAGAGAAGCAGTTGCGGCAAAAACTGCGGGATGGGGAAGCTAGTGATGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGGTTTTGGATGTGTCGGAGGAAATTTTGTCTGTTGATTTTGGGCAGGAATAA | 2160 | 44.49 | MADVMLMKEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVGNLPVVPSEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESNPYTPGENLQQWLMDEKARDQLVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESYVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSIYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVLKDHFFQFAWRPRPPSLLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEEWEKWVNEWKKLHEEEKQLRQKLRDGEASDEEEEYEAKEVEVEEVLDVSEEILSVDFGQE | 719 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 12572837 | 12577891 | + | Cp4.1LG04g16280.1 | Cpe04g01621 | 469183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe04g01621 | 719 | CDD | RRM_eIF3B | 59 | 143 | IPR034363 | - | |
Cpe04g01621 | 719 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 81 | 136 | IPR000504 | GO:0003723 | |
Cpe04g01621 | 719 | PANTHER | BNACNNG51870D PROTEIN | 6 | 712 | - | - | |
Cpe04g01621 | 719 | SUPERFAMILY | DPP6 N-terminal domain-like | 217 | 600 | - | - | |
Cpe04g01621 | 719 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 60 | 147 | IPR000504 | GO:0003723 | |
Cpe04g01621 | 719 | SUPERFAMILY | RNA-binding domain, RBD | 56 | 139 | IPR035979 | GO:0003676 | |
Cpe04g01621 | 719 | Hamap | Eukaryotic translation initiation factor 3 subunit B [EIF3B]. | 48 | 713 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe04g01621 | 719 | Gene3D | - | 418 | 632 | IPR015943 | GO:0005515 | |
Cpe04g01621 | 719 | MobiDBLite | consensus disorder prediction | 679 | 699 | - | - | |
Cpe04g01621 | 719 | Gene3D | - | 180 | 381 | IPR015943 | GO:0005515 | |
Cpe04g01621 | 719 | PIRSF | Transl_init_eIF3b | 7 | 714 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe04g01621 | 719 | Coils | Coil | 618 | 638 | - | - | |
Cpe04g01621 | 719 | Pfam | Eukaryotic translation initiation factor eIF2A | 406 | 606 | IPR013979 | - | |
Cpe04g01621 | 719 | SMART | rrm1_1 | 61 | 142 | IPR000504 | GO:0003723 | |
Cpe04g01621 | 719 | Coils | Coil | 687 | 707 | - | - | |
Cpe04g01621 | 719 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED | 6 | 712 | IPR011400 | GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Cpe04g01621 | 719 | Gene3D | - | 59 | 143 | IPR012677 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01209 | Cpe-Chr3:9879324 | Cpe04g01621 | Cpe-Chr4:12572837 | 5.06E-26 | dispersed | |
Cpe04g01621 | Cpe-Chr4:12572837 | Cpe06g00936 | Cpe-Chr6:7499206 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe04g01621 | K03253 | - | csv:101213144 | 1368.99 |