Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01621 ATGGCGGACGTGATGCTGATGAAAGAGATCGAGGACACGGCTGGTCGCCTTGGGATAGATCTTTCCCAAGTTGATTTTGAGTCTATTCGTCTCCCTCCCGGCGAGGACTTTGGAATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTAGAGTTTGATTCTGGGTTCGGAAACATTATAGTTGTTGGCAATCTTCCGGTTGTTCCTTCGGAGAAGTTTGAGAAGCTCGAAGGTGTTGTTCGTAAAATTTTTGGACAGATTGGAGTTATCAAGGATGATGGCCTATGGATGCCTGTTGACCCTACTACACAGAAAACTTTAGGGTACTGCTTTATTGAGTATGGCACTCCACAGGAGGCTGAGCTTGCCAAAGAGAAGACTGATGGGTACAAGTTGGATAGAGCACATATTTTCGCTGTTAATATGTTTGAGGACTTCGACAGATTTATGAAAGTACCAGATGAGTGGGCTCCTCCTGAAAGTAACCCATATACTCCGGGGGAAAATCTTCAACAGTGGCTTATGGATGAAAAAGCACGGGATCAGTTAGTTATTCGTTCTGGTTCTGATACTGAGGTCTTCTGGAATGATGCTAGACATTTAAAGCCTGAGCCTGTCTACAAGCGTCCATTCTGGACTGAGAGTTATGTGCAGTGGTCCCCCTTGGGGACTTACCTAGCCACAATTCACCGACAGGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCCCATCCACAGGTTAAGTTAATTGATTTTTCACCTGGTGAGAAATATCTGGTTACTTACAGCAGCCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATTGTCATCAATATTTTTGATGTAAGAACTGGAAAAGTTATGAGAGATTTCAAGGGAAGTCCTGATGATTTTGCCATTGGAGGAACTGGTGGTGTTGCGGGCGTATCTTGGCCTGTTTTTAGGTGGGGTGGTGGGAAAGATGATAAATACTTTGCCAGGATGGGGAAGAATGTAATTTCTGTCTATGAAACAGAGACTTTCTCCCTCATTGACAAAAAATCTTTGAAGGTTGAAAATGTTATGGATTTCTGCTGGTCCCCTACCGATCCCATTATTGCACTCTTTGTTCCTGAGCTAGGTGGTGGAAACCAACCGGCTAGGGTGAGTCTTGTGCAAATCCCGAGCAAAGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGCGATTGCAAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGACCGATATACAAAGACCAAGAAAAGCATATACACAGGGTTTGAACTTTTCCGCATAAAAGAGCGGGATATACCTATTGAAGTGTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCATTTGCCTGGGAGCCAAAGGGTCATAGGTTTGCAGTTATTCATGGTGACAACCCAAGGCCAGATATTAGCTTTTACTCCATGCGAAGCACTCACAACAGTGGCCGAGTATCAAAACTTACAACTCTAAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTTCTGGACGCTTCATCATTCTTGCTGGTCTGAAAGGTTTCAACGGACAGTTGGAATTCTACAATGTTGATGAGCTGGAGACAATGGCAACTGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGACGGTATGTTGCAACTGCTGTAACTTCAGTTCACGAGATGGAAAATGGTTTCAACATATGGTCCTTTAATGGAAAGCTGCTGTATCGAGTCTTGAAGGACCATTTCTTTCAGTTCGCATGGCGGCCAAGACCACCATCCTTGTTGAGTGCGGAGAAAGAGGAAGAGATAGCAAAGAATTTGAAGAAGTACAGTAAGAAGTACGAGGCTGAAGATCAGGATGTATCTATGCTGCTGAGCGAGCAGGACCGGGAGAAACGGAGAATGTTGAAGGAGGAGTGGGAGAAGTGGGTGAATGAATGGAAAAAATTGCATGAAGAAGAGAAGCAGTTGCGGCAAAAACTGCGGGATGGGGAAGCTAGTGATGAGGAAGAGGAATACGAAGCCAAAGAGGTTGAAGTAGAAGAGGTTTTGGATGTGTCGGAGGAAATTTTGTCTGTTGATTTTGGGCAGGAATAA 2160 44.49 MADVMLMKEIEDTAGRLGIDLSQVDFESIRLPPGEDFGIISDDEEVLQEESLEFDSGFGNIIVVGNLPVVPSEKFEKLEGVVRKIFGQIGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFDRFMKVPDEWAPPESNPYTPGENLQQWLMDEKARDQLVIRSGSDTEVFWNDARHLKPEPVYKRPFWTESYVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDDFAIGGTGGVAGVSWPVFRWGGGKDDKYFARMGKNVISVYETETFSLIDKKSLKVENVMDFCWSPTDPIIALFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSIYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSTHNSGRVSKLTTLKGKQANALFWSPSGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRVLKDHFFQFAWRPRPPSLLSAEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKEEWEKWVNEWKKLHEEEKQLRQKLRDGEASDEEEEYEAKEVEVEEVLDVSEEILSVDFGQE 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12572837 12577891 + Cp4.1LG04g16280.1 Cpe04g01621 469183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01621 719 CDD RRM_eIF3B 59 143 IPR034363 -
Cpe04g01621 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 136 IPR000504 GO:0003723
Cpe04g01621 719 PANTHER BNACNNG51870D PROTEIN 6 712 - -
Cpe04g01621 719 SUPERFAMILY DPP6 N-terminal domain-like 217 600 - -
Cpe04g01621 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Cpe04g01621 719 SUPERFAMILY RNA-binding domain, RBD 56 139 IPR035979 GO:0003676
Cpe04g01621 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe04g01621 719 Gene3D - 418 632 IPR015943 GO:0005515
Cpe04g01621 719 MobiDBLite consensus disorder prediction 679 699 - -
Cpe04g01621 719 Gene3D - 180 381 IPR015943 GO:0005515
Cpe04g01621 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe04g01621 719 Coils Coil 618 638 - -
Cpe04g01621 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Cpe04g01621 719 SMART rrm1_1 61 142 IPR000504 GO:0003723
Cpe04g01621 719 Coils Coil 687 707 - -
Cpe04g01621 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe04g01621 719 Gene3D - 59 143 IPR012677 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01209 Cpe-Chr3:9879324 Cpe04g01621 Cpe-Chr4:12572837 5.06E-26 dispersed
Cpe04g01621 Cpe-Chr4:12572837 Cpe06g00936 Cpe-Chr6:7499206 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01621 K03253 - csv:101213144 1368.99