Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01623 ATGGACTGGAACTTGAAGGCCCCATATTGGGATTTCACTCAATTAGAACACGATGCATCAAAGAACATTAGTACAATAGGTGCATCCAGCAACTTTGTGGAACATAGGACGACAACTTCTAGAGATTTCTCGGTTGATTTGAAGCTTGGTCAGGTCAGCCATCTTGGAACAAAATATGTAGCCAACAAACTTAAAATGGCACCATCCCCTTCAGAACCATCCAAGAGGGCAAGAGGATGTGGGACCGGGGCTCAGCCGTTGTCTTGCCTTGTTGATGGATGCGTTTCAGACCTAAGCAACTATAGAGATTACCACAGGCGCCACAAGGTCTGCGAGCTCCATTCAAAGACTCCACAGGTCACAATTGGTGGCATTAAACAAAGATTCTGTCAGCAGTGTAGTAGGTTCCATTCATTAGAGGAATTTGATGAAGGAAAGAGAAGCTGCAGGAAACGTCTGGATGGACACAATCGAAGGCGACGGAAGCCACAGCCAGAGTCCCTATCTCATTACCAAGGTTCCCCATTTATACCATTTTCTAACTCATATGTCTATCCATCATCTACAACTGTTGCGAACCATTCATGGTGCGGAATTTCAAATACTAAGGCAGATGCAAGCCTTCATACTCAGCAACACTCCACCCATTTCCCTGATAAACATCATATGTATCTTGGATCGTCATCTAATGATAGCATCCACAAAATTCCAAAGCAGCCATTAGATGTGAGCTTAGGACATCACAACAGCTTGGACCCACTTAATTCAGTTCTGAATGGCAGTGTGAGCAATGCAGATATCAGTTGCTCGGGAATGTTTCAGAGTGCTTCTGATGATGGAGGGAGAGAAGCTCCACCACCATCCCTTCCTTTTCAGTGGCAGTAA 885 44.86 MDWNLKAPYWDFTQLEHDASKNISTIGASSNFVEHRTTTSRDFSVDLKLGQVSHLGTKYVANKLKMAPSPSEPSKRARGCGTGAQPLSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGIKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPESLSHYQGSPFIPFSNSYVYPSSTTVANHSWCGISNTKADASLHTQQHSTHFPDKHHMYLGSSSNDSIHKIPKQPLDVSLGHHNSLDPLNSVLNGSVSNADISCSGMFQSASDDGGREAPPPSLPFQWQ 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12582134 12585588 - Cp4.1LG04g16380.1 Cpe04g01623 469185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01623 294 MobiDBLite consensus disorder prediction 153 173 - -
Cpe04g01623 294 MobiDBLite consensus disorder prediction 273 294 - -
Cpe04g01623 294 Pfam SBP domain 89 162 IPR004333 GO:0003677
Cpe04g01623 294 Gene3D - 79 150 IPR036893 GO:0003677|GO:0005634
Cpe04g01623 294 SUPERFAMILY SBT domain 87 168 IPR036893 GO:0003677|GO:0005634
Cpe04g01623 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 239 294 IPR044817 GO:0003677
Cpe04g01623 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 239 IPR044817 GO:0003677
Cpe04g01623 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 239 294 - -
Cpe04g01623 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 239 - -
Cpe04g01623 294 ProSiteProfiles Zinc finger SBP-type profile. 86 163 IPR004333 GO:0003677
Cpe04g01623 294 MobiDBLite consensus disorder prediction 208 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01623 Cpe-Chr4:12582134 Cpe09g00953 Cpe-Chr9:8542517 3.45E-67 dispersed
Cpe20g00088 Cpe-Chr20:468966 Cpe04g01623 Cpe-Chr4:12582134 2.25E-37 dispersed
Cpe18g00914 Cpe-Chr18:8150876 Cpe04g01623 Cpe-Chr4:12582134 9.68E-23 wgd
Cpe20g00300 Cpe-Chr20:1684871 Cpe04g01623 Cpe-Chr4:12582134 1.30E-60 wgd
Cpe03g00630 Cpe-Chr3:3756159 Cpe04g01623 Cpe-Chr4:12582134 5.65E-41 wgd
Cpe04g00482 Cpe-Chr4:5477767 Cpe04g01623 Cpe-Chr4:12582134 2.17E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49459 PF03110 SBP 2.10E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01623 - - csv:101222787 394.43