Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01638 ATGATTTTGATCTTTTTTTTTTTTAATATTAAAAAAATTGTGATAAGTGACCCAAGTAAAAAAGGCCAAAACATCTTAGAGGCTGGGAAACTAAGCTATTGCCTGAAGACTTTCCATTCTAGGTTAATATTAGAACTGTATAATTACCAAACCATTATCTTTGAAGGGCACTCCAAAATGAGGTTGTCTGGTTCTCTATTTTTACAGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAGGATCCGGCCTTAGAAAGGAGATTTCAGCCCGTCAAAGTGCCGGAACCGTCTGTGGATGAAACCATACAGATTTTGAAAGGCCTCAGAGAGCGCTATGAAATCCACCACAAACTTCGATACACGGATGAAGCATTAGTAGCTGCTGCACAACTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATTGACTTGGTTGATGAAGCTGGTTCTCGGGTTCGCCTTCGTCATGCGCAACTACCTGAGGAAGCTAGAGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTAGAAGTCAGGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAATTTAAAACTAAGATCTCTGCTCTAGTTGATAAGGGCAAGGAGATGAGCAAGGCTGAAAGTGAGGCAGGAGATGTTGGCCCTGTTGTGACCGAAGTTGATATTCAGCATATTGTTTCCTCCTGGACAGGCATTCCTGTCGAGAAAGTATCTACTGATGAATCTGACCGCCTCCTCAAAATGGAAGAGACCCTCCATAAGAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCCATCAGCCGTGCCATACGTCGAGCTCGTGTTGGTCTCAAGAATCCCAATCGTCCAATTGCAAGCTTTATATTTTCTGGTCCAACAGGTGTTGGTAAATCTGAGTTGGCAAAAGCATTGGCTGCGTACTATTTTGGCTCTGAAGAAGCAATGATTCGCCTTGACATGAGTGAATTCATGGAAAGGCATACCGTCTCCAAGCTCATTGGTTCCCCTCCTGGTTATGTTGGTTACACTGAGGGTGGTCAATTAACTGAGGCTGTTCGTCGTCGTCCATACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAATATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACGGATAGCAAGGGCAGAACTGTAGACTTCAAGAATACACTTCTGATAATGACATCAAACGTGGGAAGCAGTGTTATAGAGAAGGGAGGTCGCAGAATAGGGTTTGACCTTGATTATGATGAGAAGGATAGTAGTTATAACCGAATCAAGAGCTTGGTGACAGAGGAACTGAAACAGTACTTCAGGCCTGAGTTTCTGAATAGGTTGGATGAGATGATTGTCTTCCGTCAGCTCACTAAGCTGGAGGTGAAGGAGATTGCGGATATAATGCTGAAGGAGGTATTTGATAGATTAAAAGCAAAAGAAGTTGAACTTCAAGTGACAGAGAGATTTAGAGATAGGGTGGTTGAGGAAGGATATAACCCAAGCTATGGTGCGAGGCCATTAAGAAGGGCAATCATGAGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTGGCGAGGGAGATCAAGGAGGGCGACTCAGTAATAGTGGATGTTGATTCAGATGGAAACGTGACAGTGCTCAACGGCAGCAGTGGTGCCCCCGAGTCCTTGCCCGATGCTATCACCGTGTAA 1770 44.24 MILIFFFFNIKKIVISDPSKKGQNILEAGKLSYCLKTFHSRLILELYNYQTIIFEGHSKMRLSGSLFLQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMEFKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKEVELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAITV 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12655195 12665950 - Cp4.1LG04g16400.1 Cpe04g01638 469200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01638 589 Coils Coil 165 192 - -
Cpe04g01638 589 ProSitePatterns Chaperonins clpA/B signature 2. 336 354 IPR028299 -
Cpe04g01638 589 Pfam AAA domain (Cdc48 subfamily) 301 475 IPR003959 GO:0005524|GO:0016887
Cpe04g01638 589 ProSiteProfiles UVR domain profile. 176 211 IPR001943 GO:0005515
Cpe04g01638 589 PANTHER ATP-DEPENDENT CLP PROTEASE 68 586 - -
Cpe04g01638 589 Gene3D - 254 480 IPR027417 -
Cpe04g01638 589 CDD AAA 276 424 - -
Cpe04g01638 589 Pfam C-terminal, D2-small domain, of ClpB protein 482 562 IPR019489 -
Cpe04g01638 589 SMART ClpB_D2_small_2 482 572 IPR019489 -
Cpe04g01638 589 Pfam AAA lid domain 102 203 IPR041546 -
Cpe04g01638 589 Gene3D UVR domain 168 232 - -
Cpe04g01638 589 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 351 369 IPR001270 GO:0005524
Cpe04g01638 589 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 380 398 IPR001270 GO:0005524
Cpe04g01638 589 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 413 427 IPR001270 GO:0005524
Cpe04g01638 589 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 306 324 IPR001270 GO:0005524
Cpe04g01638 589 Gene3D - 482 578 - -
Cpe04g01638 589 PANTHER CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC 68 586 - -
Cpe04g01638 589 Gene3D - 108 248 - -
Cpe04g01638 589 Gene3D - 17 107 IPR027417 -
Cpe04g01638 589 SMART AAA_5 302 483 IPR003593 -
Cpe04g01638 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 202 IPR027417 -
Cpe04g01638 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 568 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01638 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 995.342
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01638 Cpe-Chr4:12655195 Cpe20g00808 Cpe-Chr20:7324212 0 dispersed
Cpe18g00938 Cpe-Chr18:8256920 Cpe04g01638 Cpe-Chr4:12655195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01638 Cpe_Chr04 FPKM 147.02388 145.636017 194.617188 183.30481 57.732635 65.533302 61.469467 377.71347 408.888458 413.432922