Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01639 ATGGGTAACTGCTTCTCCGATCACGCCGCTGCCCGCTCTGCCGTTGGTGCCACTGTCTTCTCCCAAAATAATACTTCCAACGTCGCCGTAGATTGTTTCTTGTTGTCTCGGGGCTATCGTGGCCTCTATTCCCAGATCGAGAGTGATCCAATGCTGGTTGTCTACGCAAAAAGACGGGACGGATCTCTAGAAGAGCTTGACCGCACTGAAGTAGTTCAAAATTCATTAAATCCAAAATGGATCCATAAGCTTAATATTAACTATCAATTTGAGGTTGTGCAAACTTTGGTGTTCTTTGTGTATGACGTTGATACTCAATATCACAGCCTAGGAGTAAAGATGCTGAAGCTAGATGAACAGCAATATCTTGGTGAAGCAACCTGTGTACTATCTGAGATAGTTACCCAATCAGACGGGTCACTTACATTGAATCTAGTATATAGAGAAGAGTCAACCAGCTCTACTCATCCACACCACTGTGGAAAACTTACTGTTCATGCTGAGGAGTGTTTTAGCTCAAAGACCACAACAGAGATGATATTAAGGTGTTCAAACTTGGGACACAAGGATCTCTTCTCAAGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTGGAGAGTAAGAGCTCCATTCCAGTTTGCAAAACTGAAGTAATAAAGAATGATTTAAATCCCACATGGAAGCCTGTGTTCCTGAATATGCAACAAGCTGCAAGCAAGGACAGCCCCTTAATAATAGAGTGTTTTGACTTCAATAGCAATGGAAGGCACGAGTTGATTGGAAAAGTTCAAAAGTCACTTGTGGAGTTGGAGAAGCTTTTTTTAAGTGGGGAGGGAGATAACTTATTCTCACTTCCTGCCGCTGGACATGATTACCATAACAAAGTACTAAAAAGCCAACTATTTGTGGACAAATTCACTGAGAGCGTCCAACAAACATTCCTTGATTACTTGGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACGGCTTCAAATGGAAACCCTCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCAAGCAATCATAGAAGTTGGAGAGGTATTGCAATTTTATGACTCAGATAAACGCTTTCCTGCCTGGGGGTTTGGAGCACGACCTATTGATGGTCCAGTCTCTCACTGTTTCAACCTAAATGGAAGTAGTCACTACTGTGAGGTTGAAGGAACTCAAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTGTCTCTTGCAGGACCAACACTTTTTGGGCCTGTGATTAACAATGCTGCATTAATTGCCAGTCAGTCTCTTGCAAATGGTGGGCGGAAGTACTTTGTTTTGCTAATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTCTTGTGAAGGCATCTGATCTGCCATTGTCTATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGAGAGACTTGAAAGCGCAACTGGACGTGTTGCTTCACGAGATATAGTCCAGTTCGTTCCATTCCGTGATGTACAAGGTGGAGAGATTTCTGTTGTTCAAGCATTGCTAGCAGAAGTACCTCATCAATTTCTGACCCATGTTCGAAGTAGAGATGTTCAACCAAATTCTTGA 1686 42.53 MGNCFSDHAAARSAVGATVFSQNNTSNVAVDCFLLSRGYRGLYSQIESDPMLVVYAKRRDGSLEELDRTEVVQNSLNPKWIHKLNINYQFEVVQTLVFFVYDVDTQYHSLGVKMLKLDEQQYLGEATCVLSEIVTQSDGSLTLNLVYREESTSSTHPHHCGKLTVHAEECFSSKTTTEMILRCSNLGHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQAASKDSPLIIECFDFNSNGRHELIGKVQKSLVELEKLFLSGEGDNLFSLPAAGHDYHNKVLKSQLFVDKFTESVQQTFLDYLAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQQAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTQGILMAYTSALHNVSLAGPTLFGPVINNAALIASQSLANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESATGRVASRDIVQFVPFRDVQGGEISVVQALLAEVPHQFLTHVRSRDVQPNS 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12666023 12671795 + Cp4.1LG04g16270.1 Cpe04g01639 469201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01639 561 Gene3D C2 domain 37 177 IPR035892 -
Cpe04g01639 561 SMART VWA_4 323 520 IPR002035 -
Cpe04g01639 561 Pfam Copine 344 559 IPR010734 -
Cpe04g01639 561 ProSiteProfiles C2 domain profile. 14 143 IPR000008 -
Cpe04g01639 561 PANTHER COPINE 1 560 IPR045052 GO:0005544
Cpe04g01639 561 ProSiteProfiles VWFA domain profile. 325 544 IPR002035 -
Cpe04g01639 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 48 147 IPR035892 -
Cpe04g01639 561 SMART C2_3c 180 282 IPR000008 -
Cpe04g01639 561 SMART C2_3c 29 142 IPR000008 -
Cpe04g01639 561 CDD vWA_copine_like 294 548 IPR010734 -
Cpe04g01639 561 SUPERFAMILY vWA-like 322 509 IPR036465 -
Cpe04g01639 561 ProSiteProfiles C2 domain profile. 159 283 IPR000008 -
Cpe04g01639 561 CDD C2A_Copine 47 145 - -
Cpe04g01639 561 Gene3D C2 domain 178 301 IPR035892 -
Cpe04g01639 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 169 271 IPR035892 -
Cpe04g01639 561 CDD C2B_Copine 178 272 IPR037768 -
Cpe04g01639 561 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 560 - -
Cpe04g01639 561 Pfam C2 domain 179 269 IPR000008 -
Cpe04g01639 561 Pfam C2 domain 48 140 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01639 - - - csv:101215724 996.112
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe04g01639 Cpe18g00942 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01639 Cpe-Chr4:12666023 Cpe11g00658 Cpe-Chr11:4378196 0 dispersed
Cpe18g00942 Cpe-Chr18:8296347 Cpe04g01639 Cpe-Chr4:12666023 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01639 Cpe_Chr04 FPKM 106.492905 111.698074 139.60347 134.46727 81.107857 88.812424 82.868591 173.556671 179.465698 173.303909