Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01640 ATGGCGCAGGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCGCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCGCCCCTTGGCACGTCGGCTGTCTCTCAAATCCCCCTCAAATCCTGGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCCCCCCCACCCGAAGATGCTTCCCTGCCTCCACCCGCCAGCTGTCCACTTCCCGTTACGCCTTCCAATGACCTGGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCAAAGAAGCGCCAGGAGCTCCTCAGTGGAAAGTCTCAGTCTGAGAAGGACGATCATGATGCCAACGAAAAAAGAGGGGACGATGTTTTGGATTTATTCGACGAGAGATTGAAGTGCTCCTTTTGCATGCAGTTACCAGAAAGGCCCGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAAAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCACCCCCGTATTAATTCCACACTTGTAGTGGCCATACGTATGGCAAAAATGTCAAAATCAATTATTTCTGGAGGATCTCAGAAGGTTTATCATGTTGTCCACAATCTAAATAGGCCAGATAAAGCCTATACCACTGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCTTGCTGAAAATGATCCGGAGAGAAACCAGGGTGTTCTGGTTGGGGAATGCTGGGAGGATAGGTTAGAATGTCGTCAGTGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCAAATAACGGTGCACAATCAGTGGTACTTTCTGGTGGTTACCAAGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGAGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAGAAATCAAACAAAGCGCTACAAGTTAGTTGCTTGAATGGTTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAAAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTGTGTCGGTATTTGTTTGTTAGATGCGACAATGATCCTGCACCATGGACAAGTGACGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAAGCAACAGACATTACGGAGAGGAAGAAAGATCCTTCATGGGACTTTGATGAGAAAGATAGTCGGTGGAAGTGGAGCAAACCTCCACCAACGAGCAAGAAGTCAGTTGAAACTGAAGATTCTACTTCTGGGAAGAAGTCAAGGAGGAGAATGAGGCAGTCGCATAATATGAATGTTCGAGAAAGGTTACTGAAAGAATTTAGCTGCCTTATTTGCCGGGAGGTGATGAATCTGCCCATTACTACGCCTTGTGCCCATAACTTTTGTAAGTCATGTTTGGAAGGTGCTTTTGCGGGCAAGTCATTCTTGAGAGAGAGAAACAGTGGTGGACGGGCTCTTAGATCCCGGAAGAATGTCATGGCTTGCCCTTGTTGCCCGACGGATATTTCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAATTGTTGGATGTGATCGAGACGTTGAAAAGTAAGATTGAAGAAGCGGATGCATCTGAGAAGCCCTGTGAAGACGAGATAGAAGGGGAAGGGGAAGGGGAACAGGAACAGGAAGAGGAGGGAAAAGATGGAAGCAACGGAAATGAAAGCAGCCGCCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGTTAATGGTGGGGAGGAAAATGATTCGCCGTCAAGCCCCGTCCACGTGGATGATTTGGAATGA 2007 47.28 MAQVSQLPCDGDGICMRCQAKPSDLETITCKTCVAPWHVGCLSNPPQILASTLQWDCPDCSPPPEDASLPPPASCPLPVTPSNDLVAAIRAIEADASLTDREKAKKRQELLSGKSQSEKDDHDANEKRGDDVLDLFDERLKCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASHPRINSTLVVAIRMAKMSKSIISGGSQKVYHVVHNLNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPILAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLNGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRPLPAIPELKKATDITERKKDPSWDFDEKDSRWKWSKPPPTSKKSVETEDSTSGKKSRRRMRQSHNMNVRERLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFAGKSFLRERNSGGRALRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIETLKSKIEEADASEKPCEDEIEGEGEGEQEQEEEGKDGSNGNESSRPVETRKRAKVVVNGGEENDSPSSPVHVDDLE 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12672072 12679264 - Cp4.1LG04g16360.1 Cpe04g01640 469202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01640 668 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Cpe04g01640 668 SUPERFAMILY RING/U-box 133 189 - -
Cpe04g01640 668 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 644 IPR045134 -
Cpe04g01640 668 CDD RING-HC 142 180 - -
Cpe04g01640 668 SMART PHD_3 14 61 IPR001965 -
Cpe04g01640 668 Pfam RING-type zinc-finger 514 546 IPR027370 -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 426 500 - -
Cpe04g01640 668 Gene3D - 241 437 IPR036987 -
Cpe04g01640 668 SMART ring_2 142 180 IPR001841 -
Cpe04g01640 668 SMART ring_2 514 570 IPR001841 -
Cpe04g01640 668 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Cpe04g01640 668 SUPERFAMILY FYVE/PHD zinc finger 7 67 IPR011011 -
Cpe04g01640 668 Coils Coil 584 604 - -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 600 668 - -
Cpe04g01640 668 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Cpe04g01640 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 601 IPR013083 -
Cpe04g01640 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 209 IPR013083 -
Cpe04g01640 668 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 644 - -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 605 624 - -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 426 472 - -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 100 127 - -
Cpe04g01640 668 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Cpe04g01640 668 SUPERFAMILY RING/U-box 507 595 - -
Cpe04g01640 668 Pfam SAD/SRA domain 273 421 IPR003105 -
Cpe04g01640 668 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Cpe04g01640 668 MobiDBLite consensus disorder prediction 625 650 - -
Cpe04g01640 668 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Cpe04g01640 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 61 IPR013083 -
Cpe04g01640 668 SUPERFAMILY PUA domain-like 244 439 IPR015947 -
Cpe04g01640 668 SMART G9a_1 265 422 IPR003105 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01640 Cpe-Chr4:12672072 Cpe10g01078 Cpe-Chr10:6511304 3.78E-15 dispersed
Cpe01g01740 Cpe-Chr1:12275666 Cpe04g01640 Cpe-Chr4:12672072 9.79E-11 transposed
Cpe03g00662 Cpe-Chr3:3940289 Cpe04g01640 Cpe-Chr4:12672072 9.14E-15 wgd
Cpe04g00447 Cpe-Chr4:5227630 Cpe04g01640 Cpe-Chr4:12672072 7.98E-19 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01640 K10638 - csv:101220457 1122.84