Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01641 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGGACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAACTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAGCTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTCCTGGATGCCCTTTCCCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAAAAAGAGGTGGTGGGGAGCGGAGGAGGAGGAACTTGGGAGGCAGTTGCAGCGGGTGAGATGAGGAAGAAGCAGCGGAAGAGAAACGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTATATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGACATTTTAA 1164 54.21 MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAGEMRKKQRKRNGSKKKQVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLTF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12681987 12684934 - Cp4.1LG04g16340.1 Cpe04g01641 469203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01641 387 MobiDBLite consensus disorder prediction 172 216 - -
Cpe04g01641 387 MobiDBLite consensus disorder prediction 145 164 - -
Cpe04g01641 387 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 212 374 IPR035209 GO:0003677
Cpe04g01641 387 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cpe04g01641 387 PANTHER PROTEIN LEAFY 1 387 IPR002910 GO:0003677|GO:0006355
Cpe04g01641 387 Gene3D Protein LEAFY 213 381 IPR038276 -
Cpe04g01641 387 PANTHER PROTEIN LEAFY 1 387 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01641 Cpe18g00943 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe18g00943 Cpe-Chr18:8306325 Cpe04g01641 Cpe-Chr4:12681987 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49461 PF17538 C_LFY_FLO 1.40E-107 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01641 - - cmax:111484867 661.759