Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01642 ATGCAAGCCACTATACTGTGTCTCTCTGCAAAAATGAATAGTCTGGTCTGGGCCATCTTCGTTCCTCTCTTTGCTGCTTTCTTGACCACAACTGATGCAGTCGTGCGGGGAAGGAGTCAACATACAGAACGAATTTCGGGCAGTGCTGGTGATGTTTTGGAGGATAATCCTGTGGGAAGGTTGAAGGTGTTTGTCTATGAGCTCCCTAGCAAATACAACAAGAAAATTCTCCAGAAAGACCCTAGATGCCTTAATCATATGTTCGCAGCTGAGATCTTCATGCATCGCTTCCTTTTAACTAGTCCTGTTCGAACCCTTAATCCTGAAGAAGCTGACTGGTTTTATACTCCAGTTTATACAACTTGCGATCTGACTCCAAATGGTCTCCCTTTGCCATTCAAGTCCCCTCGAATGATGAGAAGTGCAATACAACTTATTTCTTCAAACTGGCCTTACTGGAACCGGACTGAAGGGGCTGATCACTTTTTTGTTGTACCCCATGATTTTGGAGCTTGCTTCCACTATCAAGAAGAGAAAGCAATTGAAAGAGGAATTCTTCCTTTGCTACAACGTGCTACCTTGGTTCAGACTTTTGGACAACGAAATCATGTTTGCTTGAAGGAGGGATCAATTACAATTCCTCCATACGCTCCTCCTCAGAAAATGCACTCCCACCTCATTCCTGAAAAAACTCCTAGGTCCATCTTTGTTTACTTCCGTGGACTATTCTATGATGTGGGAAATGATCCAGAAGGTGGTTATTACGCAAGAGGTGCAAGAGCAGCAGTATGGGAGAACTTCAAGGATAATCCTCTTTTTGATGTATCAACAGAGCATCCAACTACATACTATGAGGACATGCAGCGAGCTGTGTTTTGTCTCTGTCCGCTTGGATGGGCTCCTTGGAGCCCTAGATTGGTTGAGGCTGTGATATTTGGTTGCATCCCTGTTATCATAGCAGATGACATTGTTCTGCCCTTTGCCGATGCAATTCCTTGGGAAGAAATTGGGATGTTTGTAGATGAGAAAGATGTTGCGAACTTGGACACAATATTAACGTCCATCCCACTTGAAATGATATTAAGAAAGCAGAGACTATTAGCAAATCCTTCCATGAAACAGGCAATGTTATTTCCCCAGCCTGCTCAACCTGGAGATGCTTTTCACCAGGTTCTGAATGGACTTGCCCGTAAGTTGCCTCATGACAGGAGTGTCTACCTTAAGTCCGTAATACATCAATCTAAGTTCCTTCTAAAGCATAGTCCCAAAACTCCATAG 1278 43.66 MQATILCLSAKMNSLVWAIFVPLFAAFLTTTDAVVRGRSQHTERISGSAGDVLEDNPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLTSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHSHLIPEKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDVSTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGMFVDEKDVANLDTILTSIPLEMILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVYLKSVIHQSKFLLKHSPKTP 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 12685619 12696753 + Cp4.1LG04g16300.1 Cpe04g01642 469204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01642 425 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 19 412 IPR004263 GO:0006486|GO:0016757
Cpe04g01642 425 Pfam Exostosin family 60 355 IPR040911 -
Cpe04g01642 425 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED 19 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01642 K20870 IRX10; putative beta-1,4-xylosyltransferase IRX10 [EC:2.4.2.-] - csv:101205418 810.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01642 Cpe-Chr4:12685619 Cpe08g00034 Cpe-Chr8:217597 0 dispersed
Cpe20g00623 Cpe-Chr20:3881109 Cpe04g01642 Cpe-Chr4:12685619 5.14E-20 dispersed
Cpe04g01642 Cpe-Chr4:12685619 Cpe03g01173 Cpe-Chr3:9616986 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g8 . Blo16g00315 Bda06g00703 . . Bpe13g00160 . Bma12g01101 . . . Cma11g00002 . Car11g00002 . . Cpe04g01642 . . . . . . . Cla06g01790 Cam06g1989 Cec06g2039 Cco06g2049 Clacu06g1946 Cmu06g1886 Cre06g2697 . . Cone13ag0269 Cone19ag0253 . . . . . . . . Bpe07g00913 . . . . . Cmo11g00002 . . . . . . . . . . . . . . . . . . . . Lsi06g01689 Csa01g00004 Chy02g02709 Cme02g02119
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001872 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 3 1 2 3 5 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe04g01642 Cpe_Chr04 FPKM 2.756536 3.538509 3.461426 5.869389 53.362228 41.82074 46.65123 7.197534 9.08115 7.84994