Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00055 ATGGCGTCTTCCACTACAGCCAATTCTCATGTCTCTGCCTCTGCCTCTGCCTCCCCCTCCCCCTCCCCTTGCGGAGCATGCAAGTTTCTGCGACGAAAGTGTGCGCCTGATTGCATCTTTGCTCCTTACTTTTGCTCTGAACAAAGCGCTGCCAGATTTGCCGCCATTCATAAGGTGTTTGGAGCCAGTAATGTGTCCAAGTTGCTCCTCCACGTCCCTGTTCCTCATCGCTGTGAGGCTGTTGTCAGTATTGCCTATGAAGCTCAAGCTCGCATTCGTGACCCTGTTTATGGCTGTGTTGCTCATCTTTTTGCTCTCCAACAACAGGTGGCGTACTTGCAAACACAGCTGATGCAAGCCAGGGCTCAACTTGCACAAACCCACATGCAGATTCAATGGACCGGAATCCCAAAGTTTCCAAATTATCAATCCCAAGTAACCAACTCTGCAGTTTCCCCACAGACCTCTCTGGAATCAGCTGCCAACAATGATGAAGCTCAATTTCAACAATTTCCTACAAAAATACCAGCTTCCTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTAGCTCTCAGAATGATGAGAAACTAA 591 48.73 MASSTTANSHVSASASASPSPSPCGACKFLRRKCAPDCIFAPYFCSEQSAARFAAIHKVFGASNVSKLLLHVPVPHRCEAVVSIAYEAQARIRDPVYGCVAHLFALQQQVAYLQTQLMQARAQLAQTHMQIQWTGIPKFPNYQSQVTNSAVSPQTSLESAANNDEAQFQQFPTKIPASCHGDVGELQALALRMMRN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 277418 278095 + Cp4.1LG05g01380.1 Cpe05g00055 469260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00055 196 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 195 - -
Cpe05g00055 196 MobiDBLite consensus disorder prediction 1 23 - -
Cpe05g00055 196 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
Cpe05g00055 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 16 195 - -
Cpe05g00055 196 ProSiteProfiles LOB domain profile. 22 124 IPR004883 -
Cpe05g00055 196 MobiDBLite consensus disorder prediction 1 21 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00055 Cpe15g00069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00055 Cpe-Chr5:277418 Cpe15g00070 Cpe-Chr15:502522 1.58E-52 dispersed
Cpe05g00055 Cpe-Chr5:277418 Cpe05g00056 Cpe-Chr5:278815 3.18E-52 tandem
Cpe15g00069 Cpe-Chr15:496207 Cpe05g00055 Cpe-Chr5:277418 1.09E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49469 PF03195 LOB 2.20E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00055 K13944 - csv:101214521 256.144