Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00056 ATGACAGGCTCTGGTTCTCCATGTGGAGCCTGCAAGTTCTTGAGAAGAAAATGTGTCAGAGGGTGTGTTTTTGCTCCTTACTTCTGCCATGAACAAGGAGCCTCTCACTTTGCCGCCATTCATAAGGTGTTTGGAGCCAGCAATGTGTCTAAGCTTCTTGCTCGCCTCCCTGTTACTGAGCGCTGTGAGGCTGCTGTTACCATCTCTTATGAAGCTCAAGCTCGCCTTCAAGATCCCATCTATGGCTGCGTTTCTCACATCTTTGCCCTTCAACAACAGGTTGTGAGTCTTCAGGCACAGCTTGCTTCTCTGAAGGAACAAGCAGCAGAGAGCATGATGAACGGCTCAAGTAACAACGGGGGTGGGGTGAATGAGAAGAATTGCAGAAAGATTCCATCTCATTTCCAAGATCTCCATAACTGGTTTCAATCGGATCATTCGAACGTAACGCCCGGATTCAACCCGAACCCGACTCAAGATTCAGCATCCAACCCTTATTATGATGAGAACTATCGCATTATGATCAATTCCCAATCCAATGGGAACTATGAACATCACATGGCAAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGACTATTCCATGTATACTCTTGATCATCTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCGCCTGATGATTTACAATCAGTCGCTTTTGGTCATGCTCGACGTTGGTAA 723 45.5 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGASHFAAIHKVFGASNVSKLLARLPVTERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESMMNGSSNNGGGVNEKNCRKIPSHFQDLHNWFQSDHSNVTPGFNPNPTQDSASNPYYDENYRIMINSQSNGNYEHHMAKMEESGSYGSFEETSDYSMYTLDHLHSNVQQWSFNESPDDLQSVAFGHARRW 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 278815 279652 - Cp4.1LG05g01320.1 Cpe05g00056 469261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00056 240 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cpe05g00056 240 Coils Coil 87 114 - -
Cpe05g00056 240 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Cpe05g00056 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Cpe05g00056 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00056 Cpe15g00070 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00056 Cpe-Chr5:278815 Cpe15g00070 Cpe-Chr15:502522 7.21E-152 dispersed
Cpe15g00069 Cpe-Chr15:496207 Cpe05g00056 Cpe-Chr5:278815 2.48E-42 dispersed
Cpe17g00911 Cpe-Chr17:7050123 Cpe05g00056 Cpe-Chr5:278815 7.92E-30 dispersed
Cpe05g00055 Cpe-Chr5:277418 Cpe05g00056 Cpe-Chr5:278815 3.18E-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49470 PF03195 LOB 6.40E-36 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00056 K13945 - csv:101214764 395.201