Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00094 ATGACAGAAATAGCCTGCTCCACAGCCGACCTCCGCCACCTCCTTGGCGGCTCAGCTAATGCCACTGCTGTCGCCGATTACATTTGCGGTCGATTCGACGCCATTTCGAGTAAATTTGTGGACACAAGTTATGCTGTTGACAACACTTACCTTCTTTTCTCAGCGTACCTTGTGTTTGCAATGCAGCTTGGATTTGCTATGCTTTGTGCTGGTTCTGTGAGAGCCAAAAATACAATGAATATTATGCTTACTAATGTTCTTGATGCTGTCACTGGCGGCGTTTTTTATTATATCTTTGGATTCGCTTTGGCCTTTGGAACTCCTTCTAATGGCTTCATTGGTCACCATTATTTTGGCCTCTCGCAGTTCCCTTCCTCCTCCTTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTCGCCATTGCGGCTGCTGGGATCACCAGTGGCTCCATTGCTGAACGGACCCAATTCGTTGCTTATTTGATCTATTCCTCTGTTCTTACCGGTTTGATTTATCCAATCGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGGCAGCGCAAGTAGGACGGAGAATCTTCTATTTGGCTCAGGAGTAATCGACTTCGCCGGCTCCGGCGTGGTCCATATGGTGGGTGGCATCGCCGGATTATGGGGCGCCGTCATTGAAGGCCCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCCCTCCGTGGCCACAGCGGCACATTAGTCGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTATGGCTTCAACCCCGGGTCGTTCCTTAACATCCTCAAAGCCTACGGCACTACCACCGCCGCTCCCTTTTACGGCCAATGGAGCGCCATAGGTCGCACCGCCGTCACCACCACTCTCGCCGGCTGCACGGCGGCACTAACCACCCTCTTCGGCAAACGTCTCCTCGTCGGCCACTGGAATGTCACCGACGTCTGCAACGGCCTGTTAGGCGGATTCGCTGCCATAACATCCGGCTGCGCCGTGGTGGATCCATGGGCGGCGATTGTTTGTGGGTTTTTCTCCGCCTGGGTTTTGATCGGATTCAACAAACTAGCGGAGAAACTCAAGTATGACGATCCGTTAGAGGCAGCGCAATTGCACGGCGGGTGTGGAGCTTGGGGGATTTTGTTCACTGGCTTGTTTGCAAAACAGGCTTATGTCAACGAGATTTATTCTGGGTTGCCGGACCGGCCGTACGGGCTGCTGATGGGCGGTGGCGGGAGGCTGCTGGCGGCTCATATAGTGCAAATTTTGTCGATTGCTAGTTGGGTTAGCGTGACGATGGGGCTGGTATTTTGGTTGCTGCATAAGTTTCAGTTGCTGAGAATCACGGCGGAGGAGGAGATGGCCGGCATGGACTTGACAAGCCACGGCGGACTGGCTTATGTTTATAATGATGAAGAGAAGCCTTACGTTTGA 1455 53.2 MTEIACSTADLRHLLGGSANATAVADYICGRFDAISSKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAVTGGVFYYIFGFALAFGTPSNGFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLIYPIVSHWFWSADGWGSASRTENLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGTTTAAPFYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKLKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYSGLPDRPYGLLMGGGGRLLAAHIVQILSIASWVSVTMGLVFWLLHKFQLLRITAEEEMAGMDLTSHGGLAYVYNDEEKPYV 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 459595 461120 + Cp4.1LG05g00930.1 Cpe05g00094 469299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00094 484 SUPERFAMILY Ammonium transporter 44 455 - -
Cpe05g00094 484 TIGRFAM amt: ammonium transporter 47 474 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe05g00094 484 Gene3D Ammonium transporter AmtB like domains 28 483 IPR029020 -
Cpe05g00094 484 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe05g00094 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Cpe05g00094 484 PANTHER AMMONIUM TRANSPORTER 1 481 - -
Cpe05g00094 484 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00094 Cpe-Chr5:459595 Cpe07g00817 Cpe-Chr7:7351775 0 dispersed
Cpe17g00239 Cpe-Chr17:1548409 Cpe05g00094 Cpe-Chr5:459595 0 wgd
Cpe03g01554 Cpe-Chr3:12071023 Cpe05g00094 Cpe-Chr5:459595 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00094 K03320 - csv:101223077 884.789