Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00107 ATGGCGGTTTCTCTCAGACTACACTTTTCGATGGCTTCTTCATTGCTCTTTCTTCTTCTCCACATCCTCTTCGTTCATTCAAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCATCAATGGCGGACTGGAATGTTAAGAACGAGCATGCTGTTGATAATCCAGAGGAAGTTGCATCAATGGTCGATTCGAGCATTCGCAACAGCACAGAGAGGAGGAATTTAGGGTTCTTCTCTTGCGGAACAGGAAACCCAATTGATGATTGTTGGCGATGCGACCCACGTTGGCAACTTCGCCGCAAGCACCTAGCAAATTGCGGCATTGGGTTCGGTCGCAACGCTGTCGGTGGCCGCGATGGGAGATATTATGTCGTTTCAGATCCTGGCGATGACGATCCTGTCAATCCCAGACCAGGAACTCTTCGCCATGCCGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAAAGAGATATGGTTATAACTCTAAAACAAGAACTCATCATGAACAGCTTCAAAACAATCGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGCGCTTGCATTACAATCCAATTCGTAACCAATGTCATTATTCATGGTCTGCATATTCATGACTGCAAGCCAACGGGTAACGCCATGGTTCGAAGCTCCCCTAGTCATTATGGATGGAGGACAATGGCCGATGGGGATGGGGTTTCTATTTTTGGGTCGAGTCATATTTGGATTGACCATAACTCTCTTTCTAGCTGTGCTGATGGGCTCATCGACGCTGTGATGGGATCAACTGCCATTACCATTTCTAACAATTACTTCACCCACCACAACGAGGTGATACTTTTGGGACACAGTGACTCATATGTAAGAGACAAGCAAATGCAAGTGACCATTGCTTATAACCATTTTGGTGAAGGTCTCATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTAGTAAACAATGACTACACTCATTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAAGGCAACAGATATCTTGCCCCTGCCAACCCTTTTGCCAAAGAGGTCACTAAGAGAGTTGATACGTGGAATGGTGAATGGAAGCACTGGAATTGGAGATCAGAGGGAGATCTTTTGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGGGCAGCAGCCAGTTATGCAAGAGCTTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCACCATTACTTCAACTGCAGGTGCCCTTTCTTGTCGCAGGGGATACCGTTGTTAA 1305 46.36 MAVSLRLHFSMASSLLFLLLHILFVHSSFAGDERLQSFNSSSMADWNVKNEHAVDNPEEVASMVDSSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLANCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGVSIFGSSHIWIDHNSLSSCADGLIDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKEVTKRVDTWNGEWKHWNWRSEGDLLLNGAYFTPSGAGAAASYARASSLGAKSSSLVGTITSTAGALSCRRGYRC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 547453 551374 - Cp4.1LG05g00730.1 Cpe05g00107 469312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00107 434 SMART amb_all 160 357 IPR002022 -
Cpe05g00107 434 Pfam Pectate lyase 168 349 IPR002022 -
Cpe05g00107 434 PANTHER PECTATE LYASE 18-RELATED 38 431 IPR045032 GO:0030570
Cpe05g00107 434 Gene3D - 85 427 IPR012334 -
Cpe05g00107 434 SUPERFAMILY Pectin lyase-like 62 429 IPR011050 -
Cpe05g00107 434 PANTHER PECTATE LYASE 38 431 - -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 108 125 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 132 157 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 168 184 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 232 253 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 334 353 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 376 400 IPR018082 -
Cpe05g00107 434 PRINTS Pollen allergen Amb family signature 405 428 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00107 Cpe15g00122 CCT
Cpe05g00107 Cpe15g00122 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00107 Cpe-Chr5:547453 Cpe20g00339 Cpe-Chr20:1918062 0 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe05g00107 Cpe-Chr5:547453 0 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe05g00107 Cpe-Chr5:547453 4.69E-07 wgd
Cpe17g00243 Cpe-Chr17:1588320 Cpe05g00107 Cpe-Chr5:547453 0 wgd
Cpe03g01570 Cpe-Chr3:12149997 Cpe05g00107 Cpe-Chr5:547453 8.76E-151 wgd
Cpe05g00107 Cpe-Chr5:547453 Cpe08g00382 Cpe-Chr8:2377087 6.57E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00107 K01728 - csv:101207204 816.224