Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00132 ATGGGGCCGGGCTTCGTGGCCTTGTCTGGTGCTGCAAAACAGGCCGAGCTTCTCCGAAAAGATGGAAACCACTATTTTCAAAAAGGTAGAATCGGAGCCGCCATTGAAGCCTACACCGAGGCGATTACGCTATGCCCGAATGTTGCTGTGTATTTGACGAACCGCGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGATTGCCGGAGAGCCATTCAGATTGATAGCAATTCTGTGAAGGGACATTATATGTTAGGCCTAGCATTAATACAAAATAATGTATATCCAGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCAAAGAGTTATATGGTTGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACAGGCAGTGGGAAAAAGCTTCTACCAAACGTTCATGGGAATTACAGACCTTGAAAGAAGCTTGTGAGGCAGCCCTTGAACAAAAGTATTTTCTTGACCATTCTGAACTAGAAGGGTTTGTAGATGAAGCTGAAATTGCTCATAGGAAACAATTAAAGTCTCTAAGAAGTGTGTTTGAAAAAGTTGGGGAGGCGGATGCGCCATCTGAGGTGCCTGATTATCTTTGTTGTAAAATTACACTTGATATTCTTCGTGATCCCGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATACTCGACCATTTTCGAAAGGTGGGTAACTTCGATCCCTTAACGCGGGAACTGCTCGATGAGTCACAACTTGTACCGAATTTAGCCATAAAGGAAGCAGTAGAAGCCTTTCTAGATAAGCATGGATGGGCTTATAAGACAGATTAA 849 44.05 MGPGFVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVAVYLTNRALCHRKRNDWKKVEEDCRRAIQIDSNSVKGHYMLGLALIQNNVYPEGIKHLEKALDLGRGANPKSYMVEEIWQELAKAKYRQWEKASTKRSWELQTLKEACEAALEQKYFLDHSELEGFVDEAEIAHRKQLKSLRSVFEKVGEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPLTRELLDESQLVPNLAIKEAVEAFLDKHGWAYKTD 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 673634 679814 + Cp4.1LG05g00660.1 Cpe05g00132 469337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00132 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Cpe05g00132 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Cpe05g00132 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Cpe05g00132 282 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Cpe05g00132 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Cpe05g00132 282 Pfam TPR repeat 22 56 - -
Cpe05g00132 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Cpe05g00132 282 PANTHER OS08G0113300 PROTEIN 9 281 - -
Cpe05g00132 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 281 IPR045200 GO:0000209|GO:0061630
Cpe05g00132 282 SUPERFAMILY RING/U-box 199 279 - -
Cpe05g00132 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Cpe05g00132 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Cpe05g00132 282 CDD RING-Ubox_CHIP 205 271 IPR045202 -
Cpe05g00132 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Cpe05g00132 282 SUPERFAMILY TPR-like 13 137 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00132 Cpe-Chr5:673634 Cpe05g01172 Cpe-Chr5:8001943 3.34E-10 dispersed
Cpe15g00149 Cpe-Chr15:1235181 Cpe05g00132 Cpe-Chr5:673634 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00132 K09561 - csv:101215457 520.39