Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00133 ATGGCGAAAACTGGTGTGTTTGATTCTAATCCTACAGTCGTGGGGAAGGCCACGGATTTGAAGAGGGAGTTACAGAAGCTCATCGTTGCTATAATTGATGATGATAATTTCTCCATAGACGCTATTGATCAAGCTAAAGAGATTCTTTGTGCGCTCAAGGAGTTGAAACTCAGGAAGAGATCACGCTCTTCGAATCTCTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTACAGAGCTCATGAGAGATCCTGTTGTTGTCTCAACAGGCGAGACATTCGACAGACCCTTCATTCAAAAATGGTTGAAATCAGGAAACCGAACGTGCCCAAGAACTCAGCAAGTTCTTTCACACACGAACCTTACTCCCAATCACTTGATTCGTGGAATGATATCTCGGTGGTGTAGTAGTCGGGGAATTGAGTTGCAAGATCGTGTCCATTATCTTGATGACGATATAATAACAGAGGCTGATCGGGGCCGTTTTCATACGTTAATAGAGAAAATGTCTGCAACATTACCTGAACAAAAAGCTGCTGCTAAGGAGCTTCGGATGTTGACAAAGCGGATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCATGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAATCCCAAAGTAGTGTTCATGCGGATCTGCAAGAAGATTTGATCACAACCCTCTTGAATCTGTCAATCCATGACAACAACAAGAAACTTGTTTCTGAAACTCCCAAGGTAGTACCTCTTCTAATGGAAGCACTGAGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCCGCCCTTTTCACTCTGTCAGCTCTCGACTCAAACAAAGTACTCATCGGGAAAGCTGGTGCCTTGAAACCACTCATCGACCTTTTAGATGAGGGGCATCCATTATCTATCAAAGATGCTGCTTCAGCAATATTTAATCTTTGTATAATTCATGAAAATAAAGCAAGAGCTGTGAAAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATCATGAACCGAATGCACGTTGATGAGTTGTTGGCTATTCTAGCAATGCTTTCGAACCATCCAAAAGCTATTGAGGAAATGGGAGAACTTAGAGCTGTTCATTCCCTGCTCAGAATTATCAGGGAAAGTACTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCATGCTATTTGCTTATACGATCGAACCCAGTGGAAGGACATGAGGGAGGAGGAGAAATGCTATCGAACCATTTCTGAACTTGCTCAGAATGGGACTTCAAGAGCCAAGAGAAAGGCCAGTGGCATACTCGAGAGACTGAACAGGGTAGTTAATACGACCCATACTACATAA 1371 43.18 MAKTGVFDSNPTVVGKATDLKRELQKLIVAIIDDDNFSIDAIDQAKEILCALKELKLRKRSRSSNLYENLICPDEFRCPLSTELMRDPVVVSTGETFDRPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIRGMISRWCSSRGIELQDRVHYLDDDIITEADRGRFHTLIEKMSATLPEQKAAAKELRMLTKRMPSFRALFGESHDAISLLLSPLCGDKSQSSVHADLQEDLITTLLNLSIHDNNKKLVSETPKVVPLLMEALRSGTMETRSNAAAALFTLSALDSNKVLIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVKDGAVRVLLKKIMNRMHVDELLAILAMLSNHPKAIEEMGELRAVHSLLRIIRESTCSRNKENCIVIIHAICLYDRTQWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNTTHTT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 680661 684357 - Cp4.1LG05g00590.1 Cpe05g00133 469338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00133 456 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Cpe05g00133 456 Pfam Armadillo/beta-catenin-like repeat 287 323 IPR000225 GO:0005515
Cpe05g00133 456 Gene3D - 205 351 IPR011989 -
Cpe05g00133 456 PANTHER U BOX DOMAIN-CONTAINING 6 453 - -
Cpe05g00133 456 SUPERFAMILY ARM repeat 179 446 IPR016024 -
Cpe05g00133 456 CDD RING-Ubox_PUB 76 118 IPR045210 -
Cpe05g00133 456 Gene3D - 352 450 IPR011989 -
Cpe05g00133 456 SUPERFAMILY RING/U-box 72 148 - -
Cpe05g00133 456 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 453 - -
Cpe05g00133 456 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Cpe05g00133 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Cpe05g00133 456 SMART arm_5 284 324 IPR000225 GO:0005515
Cpe05g00133 456 SMART arm_5 242 283 IPR000225 GO:0005515
Cpe05g00133 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00133 Cpe-Chr5:680661 Cpe02g01239 Cpe-Chr2:11139117 7.83E-90 dispersed
Cpe07g00821 Cpe-Chr7:7428581 Cpe05g00133 Cpe-Chr5:680661 2.08E-123 transposed
Cpe15g00150 Cpe-Chr15:1241927 Cpe05g00133 Cpe-Chr5:680661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00133 - - csv:101215688 757.288