Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00146 ATGGAACGGAATTACCCGTACGAGAATGGCGTGCTGATGACGAGAGACCCTAAGCCAAGGCTGAGATGGACGGCTGATCTTCACGACCGTTTTGTGGACGCTGTCACCAAGCTCGGTGGCCCTGGAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGCCATTTGCAGAAGTATAGACTTGGACTGCAAACACGAAAGCAAAATGTGGCTGAGAAAAGGAATGAAAACAGCGGGATAATCAGCAATTTTACAGTTGAGGAAGATGACAGAGGGTTGCAAATTGCTGCGGCACTAAAATCACAGGTTGAAGTGCAGAAAACAATACTAGAACAACTCGAGGTACAAAATAAGTTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCGCTTGCCATTAACAGTAATCTTGGAAGTCTTGAAAACACGGGAATGATGTTACTAAACTTTGACGCGGCTCTGTCAGATCAAATTGAAAAGTTTAAGAAACATGAAATGAGAGATCGTGCGGCAAATGGAAACGATACTTGTAAAACGACCAGCGGTTCACCCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGACACAAACGTGTTTAATGTTGAAAGGAACATGATAAACTTTGATTTGAAATCCAAAAGGTGGCTTTGA 723 42.6 MERNYPYENGVLMTRDPKPRLRWTADLHDRFVDAVTKLGGPGKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEKRNENSGIISNFTVEEDDRGLQIAAALKSQVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSNLGSLENTGMMLLNFDAALSDQIEKFKKHEMRDRAANGNDTCKTTSGSPIQICKVEAGEEDTNVFNVERNMINFDLKSKRWL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 764259 768830 - Cp4.1LG05g00370.1 Cpe05g00146 469351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00146 240 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cpe05g00146 240 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Cpe05g00146 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 237 - -
Cpe05g00146 240 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 237 IPR044848 GO:0003700
Cpe05g00146 240 Gene3D - 17 74 - -
Cpe05g00146 240 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Cpe05g00146 240 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cpe05g00146 240 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cpe05g00146 240 Coils Coil 107 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00146 - - - cmax:111491431 462.611
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00146 Cpe-Chr5:764259 Cpe08g00397 Cpe-Chr8:2528331 6.02E-53 dispersed
Cpe15g00178 Cpe-Chr15:1452963 Cpe05g00146 Cpe-Chr5:764259 7.63E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g818 . . . . . . . . . . . . Car02g01405 . . . Cpe05g00146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01694 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49477 PF00249 Myb_DNA-binding 2.20E-07 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00146 Cpe_Chr05 FPKM 2.527426 0.633213 0.909216 0.856052 0.0 0.477328 0.0 1.601097 0.858074 0.807076