Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00159 ATGTTTCAATTTCAATGGTATGTTAGCGACTTGGGGTATAATTTGACTGATTTTTGGTGGCTGCGGATAATGGGGAAAAGGGCCCTATTGTGCAGGATGACCGCTGATTGCAGACAACGTTTGGACGGATGGCACTCCAGTGTCCAATTTTGTAAATCTATGGAAGGCTGGATCTTGAATCTATTGTTCATTTACTGGACTTGTTGCATGGTAAGTGAGCAGAACAGAATTGAACTGGTACAGAAACCAATTGTGTATGTATTGGTGAAGAGAACAGAAGAATATACCCATCAGAAAAGTTGTATATTGAGGACTTCCTATTCCTGCAACAATGCCATTTTACTGTGGGCTCCTGTGATGCAGGAAATTATCTTGGAAAAACTAGGAATTATTTCAGTGACATCATCCGTTGACTGTCTGTGTGATACTGATTTTATCTTTTCTTTTGCTAGTCATTTGTTGTTCTGCAAAAAAATTTCTTATCTGGAAGTTGAATATGCCAAGGTTTATGAATTATCTCAATTGCATGGTTTTTCTAACCCCTGGATTCCGAAGAGGAGATCTGTAAATATTTTCCTAACAGTTGACCTTTTAGGATATAATAAGGATTGTGATCTTGTAGATGAAATGGAAACAAAGTTAACTAAGGTTCTGGATAATGGCAAAAAGATCGTTGTGGGTTTGAAGAGGAAAAGGGCAAATGAAGGCACGGCACATGTTGGAGCTGGCTACAATGCATTTTTGTCCAAGTTGACCTCATCTAGGAATAGACATGCCAAGTGCAAGAGACTCGATGACTGTGAAGTCAGTTGGGGGTCAAACTCTAGAAGATCTTTTCTTAGGAACTATAAAAATTTTAGCAGAAGTGGACTTCCCCAGAGGTTTCTATATTACGAAGATGGGGATTGGGTAGATTACCCTCAGATAATTGTTGAGTTGATTAGGAAACAGTTTCAGATTAAAAATGCGGCAATTGAAGTGGAATTTAGTGGTCGTCATTTGCTGCTAGATGCTCTGTATATGATCCAAGTAGAACTGAAAACAGCTATTCAGCAGCACATTGGCTGGATTGATGACAATGGTCGATGTTTCTTTCCAGAATTTTATTCAGTTGACAGTGAGATGCATCAGTTCCACCAGTATGAGCTGGAAGACGCTTCTGATGTTGCACTATCAAACCATACAGGAATGAGAGAGATCAATTTGCATCTTGAAATTGGAATAACTGGATCGAATAGTTCTCAATCAGAAGAGTATATTGAAGAGTCCAATAGAGACAACAAGATACATATTATCAAAGAAAAATCTTGTGATATTGATGGGGATTGGGAAGGCAGTGAAACTGAAAGTCAGAAACCTGTTGCTGAAATGCAAGAGGCAGATGGAGGAATTAGAGAGATTGGTTGTTCGATGACGCCTCAAGATGAGCTAATGCATTCAACTCTGGATTCTGATGATGTAAAAAATATGTTCTTAATGGGCATGAGATCTACTAAGAACAACATTGAAGTACTCGAGGTCAAACGTTGGTCTAGTCATTTAATGCAGGATATATCAGATATTTTTCAAAAACAAATAGAGATAACCAGGAAGAGTCGTGGGAATGCCAATGTTCAATATGGTTGGCTAGCTGGGAATAAGGATGTATTATCTGGTAGCATGCTATATGGGGTAGGTCACTCCGGACTAAAGCTTACATCCTCATATGGTGTTCACCTTTCACCTACAAGCTGCGCACATCTTAGTGCGGACAATTGTGATGAAGATGAAAAAGGGGTTAGATACATAGTGTTCTGTCATGTCATATTGGGAAATGTGGAAGTTGTCACTCCTGGATGTAGACCATGTCGTCCCAGTTCTGTAAACTTTGACAGTGGAGTAGATGACCTTCATAATCCAAGTCAATATATAGTTTGGAATATGAATATGAAAAGCCACATTTTCCCGGAGTATGTTGTCAGGGTTCCAGCTGTTCAAAACAGAGGAATTGATTCAAAAGGGCTTCGGGACCAGTTGCAGTTAAATTGCTCTTCGATTGAATCAGAGGACTGTGTGTCGTCGCCAGCTCCTGAAAAGAGATGCACAGAAAAGCTTGACCATGGATCAAGCTTGTTGAAGATTCCCAAGTCCCCCTGGATGCACTTTTCAATGTTGTTTGATGCCATTTCAAAAGAAGTTTCTCTTGATAACATGAAATTGGTGAAGAGTCATTATGGCTTATTTAGAGGACGAATTCATCCGAAGGTTGAGGTCCATTGTTGGGGATCCATTACTGAGGTCTATGCTAACGAGTCTCCATTGCAAGCTACCTCCGAAGTCTCCATGTTCTTTAAAAGTTCCGAAGGAGGAGAAAGAATGTTGAGAGACAGAATGAAAGTAAATTCTTGGACCAATTCGGGCACAATTGAACTTAAATTTTTGGATCCATTTCGCCCCAAGCTAAGAGAGGAAGGTTTCTGA 2460 39.76 MFQFQWYVSDLGYNLTDFWWLRIMGKRALLCRMTADCRQRLDGWHSSVQFCKSMEGWILNLLFIYWTCCMVSEQNRIELVQKPIVYVLVKRTEEYTHQKSCILRTSYSCNNAILLWAPVMQEIILEKLGIISVTSSVDCLCDTDFIFSFASHLLFCKKISYLEVEYAKVYELSQLHGFSNPWIPKRRSVNIFLTVDLLGYNKDCDLVDEMETKLTKVLDNGKKIVVGLKRKRANEGTAHVGAGYNAFLSKLTSSRNRHAKCKRLDDCEVSWGSNSRRSFLRNYKNFSRSGLPQRFLYYEDGDWVDYPQIIVELIRKQFQIKNAAIEVEFSGRHLLLDALYMIQVELKTAIQQHIGWIDDNGRCFFPEFYSVDSEMHQFHQYELEDASDVALSNHTGMREINLHLEIGITGSNSSQSEEYIEESNRDNKIHIIKEKSCDIDGDWEGSETESQKPVAEMQEADGGIREIGCSMTPQDELMHSTLDSDDVKNMFLMGMRSTKNNIEVLEVKRWSSHLMQDISDIFQKQIEITRKSRGNANVQYGWLAGNKDVLSGSMLYGVGHSGLKLTSSYGVHLSPTSCAHLSADNCDEDEKGVRYIVFCHVILGNVEVVTPGCRPCRPSSVNFDSGVDDLHNPSQYIVWNMNMKSHIFPEYVVRVPAVQNRGIDSKGLRDQLQLNCSSIESEDCVSSPAPEKRCTEKLDHGSSLLKIPKSPWMHFSMLFDAISKEVSLDNMKLVKSHYGLFRGRIHPKVEVHCWGSITEVYANESPLQATSEVSMFFKSSEGGERMLRDRMKVNSWTNSGTIELKFLDPFRPKLREEGF 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 834454 846945 + Cp4.1LG05g00280.1 Cpe05g00159 469364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00159 819 Gene3D - 475 655 - -
Cpe05g00159 819 SUPERFAMILY ADP-ribosylation 480 659 - -
Cpe05g00159 819 ProSiteProfiles PARP catalytic domain profile. 455 676 IPR012317 GO:0003950
Cpe05g00159 819 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE RCD1-LIKE 201 744 - -
Cpe05g00159 819 Pfam RCD1-SRO-TAF4 (RST) plant domain 708 743 IPR022003 -
Cpe05g00159 819 ProSiteProfiles WWE domain profile. 281 356 IPR004170 -
Cpe05g00159 819 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 201 744 IPR044964 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00159 - - - cmax:111491440 1045.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00159 Cpe-Chr5:834454 Cpe20g00239 Cpe-Chr20:1358960 1.70E-33 dispersed
Cpe07g00195 Cpe-Chr7:1234455 Cpe05g00159 Cpe-Chr5:834454 5.20E-62 transposed
Cpe14g00984 Cpe-Chr14:8319754 Cpe05g00159 Cpe-Chr5:834454 1.52E-101 wgd
Cpe15g00190 Cpe-Chr15:1554896 Cpe05g00159 Cpe-Chr5:834454 0 wgd
Cpe05g00159 Cpe-Chr5:834454 Cpe08g00877 Cpe-Chr8:6923763 3.42E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g715 . . . . . . . . . . . . . . . . Cpe05g00159 . . . . . . . . . . . . . . . Cone12ag0487 . . . . . . Blo03g00880 . Bda07g00080 . . . . . . . . . . . . . . Bhi05g00449 . . Lac11g2448 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007308 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 8 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00159 Cpe_Chr05 FPKM 1.501695 0.635897 0.0 0.0 2.145981 2.176031 2.521087 0.0 0.0 0.0