Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00160 ATGGAGCTATTCCCTGCACAGCCAGATTTGTCGCTCCAAATTAGCCCTCCCAATACAAATAAACCCTCTTCCACTTGGAGAACAACAACACCCTCTCAAGAACATCTTGATTTGGGGTTTTGGAATAATCTCAATTTGGAGTCTGCTAAACCCACTCCCAAACATCACCCTACTAATCAACACTTTGATCTCTCCCTTTCCAACTTCACTCAAATTAACCAATACTCCAATATTCCTCCTCCTCCGCCTCCTCCTCTTCCTCACCACCACCACCCTGCCTTCCACGGCGGCGCTCACCTCTTCCAAACCCTACACAAAACCCACCACCCACCCACCATTTTCCACCACACTCCTCCGCCACCACCCACCACATCGCACCCTTTTCCAGGACAGAACAATGTTCAAGACTTGGCCTTTTTGCGACCCATTAGAGGAATTCCGGTGTACCATCAGACAACTAACCCCGCCGGCACTCCCTCCGCCAGCGGCCACGGCCAGATAATGATGCGATCCAGATTCTTGTCTAGGTTTCCGGCCAAACGCAGCATGAGAGCCCCAAGGATGCGATGGACATCCACTCTCCATGCTCGCTTTGTTCATGCTGTTGAACTCCTCGGCGGCCATGAAAGAGCGACGCCCAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACCGTACAGTGAAGACCACAGACAGAGCAGCAGCTTCTTCAGGGGACACGAGCAATATTGAAGATATAATATTTGACATTCAAAAGCCAAGCATGGGAAGGCAAAATGAGCACTCAGTTCAACAAAATAGGCAAAACCCTCATCAAGATAAGGATTATCATGCCCTCTGGAGCAATTCTTCCAGGGAAGCTTGGTTGCATGGTTTTCCTAATGATTCTTCTAGGGACCTTTCATCGTCCCTCGAGAATGACGTGGATCCAAAGAGCTCAAACAACGAGAGACTATCGGAAATAAGCTCGTCGGGGAATCTTCTTCCTGAGAAGCCTAATTTGGAATTCACATTAGGAAGGGCAGTTTGA 1068 48.5 MELFPAQPDLSLQISPPNTNKPSSTWRTTTPSQEHLDLGFWNNLNLESAKPTPKHHPTNQHFDLSLSNFTQINQYSNIPPPPPPPLPHHHHPAFHGGAHLFQTLHKTHHPPTIFHHTPPPPPTTSHPFPGQNNVQDLAFLRPIRGIPVYHQTTNPAGTPSASGHGQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGDTSNIEDIIFDIQKPSMGRQNEHSVQQNRQNPHQDKDYHALWSNSSREAWLHGFPNDSSRDLSSSLENDVDPKSSNNERLSEISSSGNLLPEKPNLEFTLGRAV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 852093 856684 - Cp4.1LG05g00160.1 Cpe05g00160 469365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00160 355 Gene3D - 185 242 - -
Cpe05g00160 355 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 353 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cpe05g00160 355 MobiDBLite consensus disorder prediction 1 31 - -
Cpe05g00160 355 MobiDBLite consensus disorder prediction 11 31 - -
Cpe05g00160 355 SUPERFAMILY Homeodomain-like 183 239 IPR009057 -
Cpe05g00160 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 186 239 IPR006447 GO:0003677
Cpe05g00160 355 MobiDBLite consensus disorder prediction 309 344 - -
Cpe05g00160 355 MobiDBLite consensus disorder prediction 72 95 - -
Cpe05g00160 355 MobiDBLite consensus disorder prediction 328 343 - -
Cpe05g00160 355 MobiDBLite consensus disorder prediction 76 90 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00160 - - - bhj:120077162 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01479 Cpe-Chr2:12725695 Cpe05g00160 Cpe-Chr5:852093 3.28E-53 dispersed
Cpe05g00160 Cpe-Chr5:852093 Cpe20g00167 Cpe-Chr20:945976 7.43E-40 dispersed
Cpe06g00132 Cpe-Chr6:699448 Cpe05g00160 Cpe-Chr5:852093 1.45E-28 dispersed
Cpe01g01981 Cpe-Chr1:16933603 Cpe05g00160 Cpe-Chr5:852093 8.23E-31 transposed
Cpe14g00982 Cpe-Chr14:8301898 Cpe05g00160 Cpe-Chr5:852093 9.27E-10 wgd
Cpe15g00191 Cpe-Chr15:1569966 Cpe05g00160 Cpe-Chr5:852093 2.39E-146 wgd
Cpe05g00160 Cpe-Chr5:852093 Cpe08g00875 Cpe-Chr8:6906942 1.06E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49480 None None None None Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00160 Cpe_Chr05 FPKM 11.740741 17.062399 13.128659 14.464897 18.077047 14.005443 14.08097 12.92707 16.423796 13.223757