Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00169 ATGAAATCGGCTCTCCTCAGAACTGTCTCCATTCCCGTCATCTGGCCGTCCGGCACCGCTTCGTCATCCTTCTCCAATTACAGACCGTTGCATGGAGTTTTCACCGGCCACAAGAGTTCCGTTTCGTCTCCAAAGATCTCTCTGCATTTTGAGATGAATAATCCTAGAGGAAGGAATTCGAGTGGTATACGAAGGGCGTCATCGGAGAGCGACATCTCTCGATCGCTGCATGAGGTTTCGAATCCGTATGATCAATTTGGAGGAGTCGGATCTCGATCTCGGACTCGATCCTCTCATTCTGAAATACCAGAGGAGGAGTTTTTGAACCAGGATGAATTTGACAGTGATTCGATGGAGGACGACTCTGGATGTTTGGATAACGGAATCGGCTGCAGTGATGGCGCTGAATTTTTTACAGATATGTTTTATGACGGAAGTAATGACCGTAATAAGATCGGAGCGTACTACGAAGAGTTGCTGAAGTTGAACCCTAACGACGCTCTGTTACTGAGAAACTACGGAAAATTCTTACATGAGGTGGAGAAAGATCATGTGAGATCAGAGGAATGCTACAGCAGAGCAATATTGGCGAATCCAAGCGACGGAGAGTTGTTGGCTTTGTATGGAAAACTGGTGTGGGAGTCTCACAAAGACAAGCAAAGAGCTGAATATTACTTCGACCGCGCCGTGCGTGCCTCCCCTAACGACTGTTTGGTGATTGGTTATTACGCCTATTTCTTGTGGCAAATTGAAGATGATGAAGAACAAGAGGCGGCGGAGGTATGGCCGGCGGCTATGGTAGCGGCGTTTTAA 813 47.48 MKSALLRTVSIPVIWPSGTASSSFSNYRPLHGVFTGHKSSVSSPKISLHFEMNNPRGRNSSGIRRASSESDISRSLHEVSNPYDQFGGVGSRSRTRSSHSEIPEEEFLNQDEFDSDSMEDDSGCLDNGIGCSDGAEFFTDMFYDGSNDRNKIGAYYEELLKLNPNDALLLRNYGKFLHEVEKDHVRSEECYSRAILANPSDGELLALYGKLVWESHKDKQRAEYYFDRAVRASPNDCLVIGYYAYFLWQIEDDEEQEAAEVWPAAMVAAF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 899558 900810 - Cp4.1LG05g00170.1 Cpe05g00169 469374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00169 270 Gene3D Tetratricopeptide repeat domain 135 247 IPR011990 GO:0005515
Cpe05g00169 270 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 258 - -
Cpe05g00169 270 SUPERFAMILY TPR-like 147 255 IPR011990 GO:0005515
Cpe05g00169 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 258 - -
Cpe05g00169 270 MobiDBLite consensus disorder prediction 50 120 - -
Cpe05g00169 270 MobiDBLite consensus disorder prediction 50 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00169 - - - cmax:111466874 330.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00169 Cpe15g00202 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00169 Cpe-Chr5:899558 Cpe12g00741 Cpe-Chr12:6853910 2.50E-34 dispersed
Cpe03g01546 Cpe-Chr3:12024286 Cpe05g00169 Cpe-Chr5:899558 1.65E-14 transposed
Cpe15g00202 Cpe-Chr15:1689155 Cpe05g00169 Cpe-Chr5:899558 1.34E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g687 . . . . . . Bma07g00922 . . . Cma02g01623 . Car02g01382 . . . Cpe05g00169 . . . . . . . . . . . . . . Cone8ag0479 . . . . . Chy04g00108 . . Blo19g00198 . . Bpe08g00824 . . . Sed01g4122 Cmo02g01668 Cmo19g00241 . . . . . Cpe15g00202 Bhi05g00477 Tan07g1993 Cmetu04g2583 Lac11g2429 Hepe06g1786 . Lcy12g1959 . . . . . . . . Csa03g04595 . Cme04g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009490 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00169 Cpe_Chr05 FPKM 47.272579 51.522446 27.806692 28.505405 25.26367 22.187326 26.038727 8.93864 9.712863 10.039717