Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00173 ATGTTTTCACCTCCACCTCCCTTAGAGTTTCCAGATGATGATTCAGGCCCAAATTTTTCACCTCTTGTGATTGCAATTATTGGAATTCTGGCTAGTGCTTTTCTTCTTATAACCTATTACACCATCATTTCAAAGTATTATGGCAACACGAGCCGCTTGTCTAGGACTCAAGATCATGACCCAAATCAGGAGTTTGAAGATACTCACAACCCAACACTCCACGAGCCGTGGCATGTCGCCACTACTGGCTTGGATGAAGCACTGATCAAGTGCATTACGGTTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGCCTCAGTGAGTTTCAAGAAGATGAGAGCCTTAGGTTGTTGCCTAAATGCAGCCACGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTGTGTCGTGCAAACATCGTCTCTGTCACTGCTTCTTCTCCACTTCAACTGCCTGCAACCACTGGAAACCCCACAACTAATGAGGCCATTCCAGAGACCTCTCAGGCAAATAACCATGAGGCTGTTTCACAGGAACCTGGAAGAAGTTTTGGCAATGACAATGCTAAGAACTCAGTTCGCGCTTTCAGCGACCTTGGAAATTTGGTGAAAAGAGATACTGTCATTGAGCTTAGAGATGGAAGATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAACCATATCATTATCGCAGATGAGTTTGGAGGCATTGATGAAGCAGGAAGCTCAGGTGATGTTGGATCATCCAAACATTCAATGGGAGAAGACAGCAAGTCAAATCATAGAAAAAGAATCTTACATTGTGTGATGAGTCCTGTCTCAATGAAGAGATCGTTCTCAAGTGGAAGATTTTCTCTCACGAAACATGGAAGAGAACACAGAGGACTTGCCCCTGTCTGA 957 43.89 MFSPPPPLEFPDDDSGPNFSPLVIAIIGILASAFLLITYYTIISKYYGNTSRLSRTQDHDPNQEFEDTHNPTLHEPWHVATTGLDEALIKCITVCKYKRGDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVTASSPLQLPATTGNPTTNEAIPETSQANNHEAVSQEPGRSFGNDNAKNSVRAFSDLGNLVKRDTVIELRDGRLQQIRRSISMDHCSQNHIIIADEFGGIDEAGSSGDVGSSKHSMGEDSKSNHRKRILHCVMSPVSMKRSFSSGRFSLTKHGREHRGLAPV 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 912739 913695 - Cp4.1LG05g00050.1 Cpe05g00173 469378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00173 318 MobiDBLite consensus disorder prediction 167 203 - -
Cpe05g00173 318 MobiDBLite consensus disorder prediction 259 280 - -
Cpe05g00173 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Cpe05g00173 318 SMART ring_2 109 150 IPR001841 -
Cpe05g00173 318 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cpe05g00173 318 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 1 308 - -
Cpe05g00173 318 Pfam Ring finger domain 108 151 IPR001841 -
Cpe05g00173 318 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 308 IPR044675 -
Cpe05g00173 318 SUPERFAMILY RING/U-box 103 158 - -
Cpe05g00173 318 CDD RING-H2_EL5_like 108 151 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00173 Cpe15g00207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01232 Cpe-Chr2:11104665 Cpe05g00173 Cpe-Chr5:912739 2.32E-15 dispersed
Cpe04g00372 Cpe-Chr4:4386496 Cpe05g00173 Cpe-Chr5:912739 8.01E-49 dispersed
Cpe05g00173 Cpe-Chr5:912739 Cpe08g00424 Cpe-Chr8:2703584 1.04E-57 dispersed
Cpe18g00595 Cpe-Chr18:6340455 Cpe05g00173 Cpe-Chr5:912739 1.38E-27 dispersed
Cpe16g00220 Cpe-Chr16:4360520 Cpe05g00173 Cpe-Chr5:912739 2.46E-26 transposed
Cpe15g00207 Cpe-Chr15:1711316 Cpe05g00173 Cpe-Chr5:912739 0 wgd
Cpe15g00366 Cpe-Chr15:4874155 Cpe05g00173 Cpe-Chr5:912739 2.34E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00173 - - cmo:103503554 567.0