Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00176 ATGACGGACTGCCGATTACCATCGGTCATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTCTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACAGCAACTTCCTCAGCAGCCGTATGCCTCTGTTTCTGCTGCGTCGGACCCGAGTAAAGGTGTCGGTCAATCGTTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCTTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTACCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGGTCGTTCTGTGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGACGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTGATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAAGGACCCTGCGACTGTGAGTAGTAACAACAACAACAACAACAACAATCCTGTGGCTTCTGCTCCAACTCCGACCACCACAAACAGCCAGCCGATTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTTCTCAAAATAGCCACCGACAGTCGCAGGCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAGTCCGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCGTCGGGCAATTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTCAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCTAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTGGATATCAATCACGCTAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCCACTGTCAAGATGAGCCGATTATACACTCAGGAGCAGCTAAGGTTAGCTCTTTCGTCGAAATTAGGCGCACCTCGGTAG 2082 48.9 MTDCRLPSVMNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQQQLPQQPYASVSAASDPSKGVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSTNGVVELGSSELICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIKDPATVSSNNNNNNNNPVASAPTPTTTNSQPISKITSQIETPKSSVVTETPTSVPPSQNSHRQSQAVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGNSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLALSSKLGAPR 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 929089 931170 + Cp4.1LG05g00100.1 Cpe05g00176 469381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00176 693 PANTHER MYC 12 689 IPR045084 GO:0003700|GO:0006355
Cpe05g00176 693 PANTHER TRANSCRIPTION FACTOR MYC2 12 689 - -
Cpe05g00176 693 MobiDBLite consensus disorder prediction 34 71 - -
Cpe05g00176 693 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 509 577 IPR036638 GO:0046983
Cpe05g00176 693 Coils Coil 552 579 - -
Cpe05g00176 693 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 81 261 IPR025610 -
Cpe05g00176 693 MobiDBLite consensus disorder prediction 124 143 - -
Cpe05g00176 693 SMART finulus 512 561 IPR011598 GO:0046983
Cpe05g00176 693 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 506 555 IPR011598 GO:0046983
Cpe05g00176 693 MobiDBLite consensus disorder prediction 404 430 - -
Cpe05g00176 693 MobiDBLite consensus disorder prediction 585 606 - -
Cpe05g00176 693 MobiDBLite consensus disorder prediction 300 366 - -
Cpe05g00176 693 MobiDBLite consensus disorder prediction 477 516 - -
Cpe05g00176 693 Pfam Helix-loop-helix DNA-binding domain 510 555 IPR011598 GO:0046983
Cpe05g00176 693 Gene3D - 498 587 IPR036638 GO:0046983
Cpe05g00176 693 MobiDBLite consensus disorder prediction 404 445 - -
Cpe05g00176 693 CDD bHLH_AtAIB_like 503 578 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00176 Cpe15g00214 CCT
Cpe05g00176 Cpe14g00960 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00176 Cpe-Chr5:929089 Cpe08g00916 Cpe-Chr8:7224831 2.27E-21 dispersed
Cpe14g00960 Cpe-Chr14:8090753 Cpe05g00176 Cpe-Chr5:929089 0 wgd
Cpe15g00214 Cpe-Chr15:1833374 Cpe05g00176 Cpe-Chr5:929089 0 wgd
Cpe05g00176 Cpe-Chr5:929089 Cpe08g00859 Cpe-Chr8:6788078 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49484 PF14215 bHLH-MYC_N 3.10E-55 CL0161 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00176 K13422 - csv:101218165 1032.32