Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe05g00176 | ATGACGGACTGCCGATTACCATCGGTCATGAATTTCTGGGCGGATGAGAACGCGTCGATGATGGACGCATTTATGAGCACCGATCTGAATTCCTTCTGGGTTACGCCGCCGCAGCCACAGCAACAGCAACAGCAACTTCCTCAGCAGCCGTATGCCTCTGTTTCTGCTGCGTCGGACCCGAGTAAAGGTGTCGGTCAATCGTTACCGCCGTCGTCTATGGCGGTTTTCAACCAGGAGACTCTCCAGCAGCGCCTCCAAGCTTTGATTGAAGGCGCTCAGGAGAGCTGGACTTACGCTATCTTCTGGCAGTCTTCGTATGACTGCTCCGGCGCCACCGTCTTGGGCTGGGGCGATGGGTACTACAAAGGCGAAGAAGATAAAGGCAAAGAAAAGGCCAAATCGAGTACCTCAAAATCAGAGCAGGAGTACCGTAAGAAAGTCCTTCGCGAGCTCAATTCTCTCATTTCTGGTTCACCTACCTCTGAAGACGACGCCGTCGACGAGGTTGTCACCGATACCGAGTGGTTCTTCTTGGTGTCGATGACTCAGTCGTTCGTCTCCGGCGTCGGTTTACCGGGACAGGCGTTTTTCGACTCAAACCCTATTTGGGTTGCGGGTTCGGATCGGCTTGCGGGGTCGTTCTGTGAACGAGCCCGTCAGGGTCAGGTTTTCGGGTTGCAGACGGTGGTTTGTATTCCGTCGACGAATGGAGTCGTGGAATTGGGGTCGAGTGAGTTGATATGCCAGAGCTCCGATCTGATGAATAAGGTTAGGGTTTTGTTCAATTTCAATAATCTGGAGGTTGAAACCTGGCCAATTAGTGGTGTTGACCAAGGGGAGAATGACCCATCTTCGCTTTGGATCACTGAGCCATCAAACGCCATTGAAATTAAGGACCCTGCGACTGTGAGTAGTAACAACAACAACAACAACAACAATCCTGTGGCTTCTGCTCCAACTCCGACCACCACAAACAGCCAGCCGATTTCCAAAATTACATCACAGATTGAAACCCCCAAATCAAGCGTTGTTACTGAAACTCCAACCTCTGTTCCTCCTTCTCAAAATAGCCACCGACAGTCGCAGGCGGTTCAGACACAGAGCTTCTTTACCAGGGAATTGAACTTCTCTGAATTTGGGTACGATAATAGCAGCTTGAAGGATGGGAACTCACATTCTCTCAAGCCGGAGTCCGGCGAGATTCTGAACTTCGGTGAGAGCAAGAGGAGTTCCTTTCCCAAAACAGATACCTTGCCGTCGGGCAATTCCCAATTTGGAGCAGATGAGAATAAGAAGAGATCCCCTCCTTCACGTGGGAGTAACGAAGAGGGGATGCTTTCTTTTACTTCTGGTGTGATTCTTCCATCCTCAGGCGCTTTGAAATCGGGTGGTGGCATTGGCGATTCCGATCACTCCGACCTTGAAGCTTCGGTGATCCGTGAGGTGGAGAGTAGTAGAGCGGTGGAGCCAGAGAAACGGCCTCGCAAACGGGGGCGAAAGCCTGCAAATGGTAGAGAAGAACCATTGAATCACGTTGAGGCGGAGAGGCAGAGAAGAGAAAAGCTAAACCAAAGATTCTATGCTCTTCGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGTGATGCTATCTCTTATATCAATGAGCTCAGAGGGAAGCTTCAAACTGCAGAATCAGATAAGGAGGATTTACAGAAGCAATTAGATTCAGTCAAGAAGTTGATGATGTCTAATAAAGATTCATGTATATCAACCTCAAATCAACCTCCGCCAGATGAAGACATTAAAGCATCAAACATCCATGGAAACCACAGTGGTATTGAAACCGATGTCGATGTGAAGATAATCAGTTGGGACGCAATGATCCGAATCCAATCTAGCAAGAAAAACCATCCAGCTGCACGGCTAATGGCAGCTTTAGAGGAACTGGACTTGGATATCAATCACGCTAGCATTTCAGTGGTTAATGATCTGATGATCCAACAAGCCACTGTCAAGATGAGCCGATTATACACTCAGGAGCAGCTAAGGTTAGCTCTTTCGTCGAAATTAGGCGCACCTCGGTAG | 2082 | 48.9 | MTDCRLPSVMNFWADENASMMDAFMSTDLNSFWVTPPQPQQQQQQLPQQPYASVSAASDPSKGVGQSLPPSSMAVFNQETLQQRLQALIEGAQESWTYAIFWQSSYDCSGATVLGWGDGYYKGEEDKGKEKAKSSTSKSEQEYRKKVLRELNSLISGSPTSEDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWVAGSDRLAGSFCERARQGQVFGLQTVVCIPSTNGVVELGSSELICQSSDLMNKVRVLFNFNNLEVETWPISGVDQGENDPSSLWITEPSNAIEIKDPATVSSNNNNNNNNPVASAPTPTTTNSQPISKITSQIETPKSSVVTETPTSVPPSQNSHRQSQAVQTQSFFTRELNFSEFGYDNSSLKDGNSHSLKPESGEILNFGESKRSSFPKTDTLPSGNSQFGADENKKRSPPSRGSNEEGMLSFTSGVILPSSGALKSGGGIGDSDHSDLEASVIREVESSRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELRGKLQTAESDKEDLQKQLDSVKKLMMSNKDSCISTSNQPPPDEDIKASNIHGNHSGIETDVDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDINHASISVVNDLMIQQATVKMSRLYTQEQLRLALSSKLGAPR | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 929089 | 931170 | + | Cp4.1LG05g00100.1 | Cpe05g00176 | 469381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe05g00176 | 693 | PANTHER | MYC | 12 | 689 | IPR045084 | GO:0003700|GO:0006355 | |
Cpe05g00176 | 693 | PANTHER | TRANSCRIPTION FACTOR MYC2 | 12 | 689 | - | - | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 34 | 71 | - | - | |
Cpe05g00176 | 693 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 509 | 577 | IPR036638 | GO:0046983 | |
Cpe05g00176 | 693 | Coils | Coil | 552 | 579 | - | - | |
Cpe05g00176 | 693 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 81 | 261 | IPR025610 | - | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 124 | 143 | - | - | |
Cpe05g00176 | 693 | SMART | finulus | 512 | 561 | IPR011598 | GO:0046983 | |
Cpe05g00176 | 693 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 506 | 555 | IPR011598 | GO:0046983 | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 404 | 430 | - | - | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 585 | 606 | - | - | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 300 | 366 | - | - | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 477 | 516 | - | - | |
Cpe05g00176 | 693 | Pfam | Helix-loop-helix DNA-binding domain | 510 | 555 | IPR011598 | GO:0046983 | |
Cpe05g00176 | 693 | Gene3D | - | 498 | 587 | IPR036638 | GO:0046983 | |
Cpe05g00176 | 693 | MobiDBLite | consensus disorder prediction | 404 | 445 | - | - | |
Cpe05g00176 | 693 | CDD | bHLH_AtAIB_like | 503 | 578 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g00176 | Cpe15g00214 | CCT | |
Cpe05g00176 | Cpe14g00960 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00176 | Cpe-Chr5:929089 | Cpe08g00916 | Cpe-Chr8:7224831 | 2.27E-21 | dispersed | |
Cpe14g00960 | Cpe-Chr14:8090753 | Cpe05g00176 | Cpe-Chr5:929089 | 0 | wgd | |
Cpe15g00214 | Cpe-Chr15:1833374 | Cpe05g00176 | Cpe-Chr5:929089 | 0 | wgd | |
Cpe05g00176 | Cpe-Chr5:929089 | Cpe08g00859 | Cpe-Chr8:6788078 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49484 | PF14215 | bHLH-MYC_N | 3.10E-55 | CL0161 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe05g00176 | K13422 | - | csv:101218165 | 1032.32 |