Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00183 ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACATGATTTCAACCTTCATCACCCGCACCACCACCCTGATTCTCAATCTCACCATGAAGACGAATCAGATCAGCCGTTGGATTTTGTCTCCGCCGCCCCCGCCGCCACTGACATGGCGGTCTCTCGCCGTCCCCGTGGCCGTCCAGCTGGCTCCAAAAACAAACCCAAGCCCCCGGTTATCATTACCCGGGAAAGCGCCAATACCCTAAGGGCTCATATTTTTGAAGTTGGAAGCGGCTGTGATGTCTTTGATAGCATCGCTATCTACGCCCGCCGCCGCCAGCGAGGGATATGCATCTTGAATGCCAACGGAATGGTAACTAATCTCAACTTACGCCAACCGACCGGCACCGGCGCTGTCTTAAACCTACAAGGGAGGTTCGAGATATTATCGCTTACCGGATCTTTCCTCCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATATTTAGCGGGTGGTCAAGGGCAAGTCGTCGGTGGGAATGTTGTCGGAGAGTTGGTGGCTGCCGGGCCAGTAACTGTCATCGTCGCATCGTTCGCGAATGTAGCATACGAGAGACTCCCACTCGAGGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGATCAGATGCAGCCACCAACGTCGCAGGGTGGCGGCCCGTTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTCTAA 777 52.25 MAGLDLGNRYIHQLQRHDFNLHHPHHHPDSQSHHEDESDQPLDFVSAAPAATDMAVSRRPRGRPAGSKNKPKPPVIITRESANTLRAHIFEVGSGCDVFDSIAIYARRRQRGICILNANGMVTNLNLRQPTGTGAVLNLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTVIVASFANVAYERLPLEEQEQEQEQEQEQDQMQPPTSQGGGPFPDPSSGLPFFNLPLNMQNQIQLPF 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 963252 964028 - Cp4.1LG05g00010.1 Cpe05g00183 469388
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00183 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 211 - -
Cpe05g00183 258 Gene3D - 85 220 - -
Cpe05g00183 258 ProSiteProfiles PPC domain profile profile. 82 219 IPR005175 -
Cpe05g00183 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 257 - -
Cpe05g00183 258 MobiDBLite consensus disorder prediction 52 75 - -
Cpe05g00183 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 198 IPR005175 -
Cpe05g00183 258 MobiDBLite consensus disorder prediction 208 245 - -
Cpe05g00183 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 257 IPR014476 GO:0003680
Cpe05g00183 258 PIRSF ESCAROLA 5 254 IPR014476 GO:0003680
Cpe05g00183 258 MobiDBLite consensus disorder prediction 20 40 - -
Cpe05g00183 258 CDD DUF296 86 169 IPR005175 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00183 Cpe-Chr5:963252 Cpe12g00049 Cpe-Chr12:266568 1.28E-85 dispersed
Cpe14g00955 Cpe-Chr14:8063080 Cpe05g00183 Cpe-Chr5:963252 1.02E-91 wgd
Cpe15g00220 Cpe-Chr15:1903902 Cpe05g00183 Cpe-Chr5:963252 7.54E-119 wgd
Cpe03g01656 Cpe-Chr3:12655423 Cpe05g00183 Cpe-Chr5:963252 2.45E-91 wgd
Cpe05g00183 Cpe-Chr5:963252 Cpe08g00854 Cpe-Chr8:6759896 1.49E-84 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00183 - - cmo:103503535 384.8