Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g00183 | ATGGCTGGTTTGGATTTAGGCAATCGCTATATTCACCAACTTCAAAGACATGATTTCAACCTTCATCACCCGCACCACCACCCTGATTCTCAATCTCACCATGAAGACGAATCAGATCAGCCGTTGGATTTTGTCTCCGCCGCCCCCGCCGCCACTGACATGGCGGTCTCTCGCCGTCCCCGTGGCCGTCCAGCTGGCTCCAAAAACAAACCCAAGCCCCCGGTTATCATTACCCGGGAAAGCGCCAATACCCTAAGGGCTCATATTTTTGAAGTTGGAAGCGGCTGTGATGTCTTTGATAGCATCGCTATCTACGCCCGCCGCCGCCAGCGAGGGATATGCATCTTGAATGCCAACGGAATGGTAACTAATCTCAACTTACGCCAACCGACCGGCACCGGCGCTGTCTTAAACCTACAAGGGAGGTTCGAGATATTATCGCTTACCGGATCTTTCCTCCCGCCGCCTGCTCCTCCCGGCGCTACTAGTTTGACTATATATTTAGCGGGTGGTCAAGGGCAAGTCGTCGGTGGGAATGTTGTCGGAGAGTTGGTGGCTGCCGGGCCAGTAACTGTCATCGTCGCATCGTTCGCGAATGTAGCATACGAGAGACTCCCACTCGAGGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGATCAGATGCAGCCACCAACGTCGCAGGGTGGCGGCCCGTTTCCAGATCCATCTTCAGGGCTTCCTTTCTTCAATTTGCCTCTAAATATGCAGAACCAAATTCAGCTACCATTCTAA | 777 | 52.25 | MAGLDLGNRYIHQLQRHDFNLHHPHHHPDSQSHHEDESDQPLDFVSAAPAATDMAVSRRPRGRPAGSKNKPKPPVIITRESANTLRAHIFEVGSGCDVFDSIAIYARRRQRGICILNANGMVTNLNLRQPTGTGAVLNLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVVGELVAAGPVTVIVASFANVAYERLPLEEQEQEQEQEQEQDQMQPPTSQGGGPFPDPSSGLPFFNLPLNMQNQIQLPF | 258 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 963252 | 964028 | - | Cp4.1LG05g00010.1 | Cpe05g00183 | 469388 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g00183 | 258 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 82 | 211 | - | - | |
| Cpe05g00183 | 258 | Gene3D | - | 85 | 220 | - | - | |
| Cpe05g00183 | 258 | ProSiteProfiles | PPC domain profile profile. | 82 | 219 | IPR005175 | - | |
| Cpe05g00183 | 258 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 257 | - | - | |
| Cpe05g00183 | 258 | MobiDBLite | consensus disorder prediction | 52 | 75 | - | - | |
| Cpe05g00183 | 258 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 86 | 198 | IPR005175 | - | |
| Cpe05g00183 | 258 | MobiDBLite | consensus disorder prediction | 208 | 245 | - | - | |
| Cpe05g00183 | 258 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 257 | IPR014476 | GO:0003680 | |
| Cpe05g00183 | 258 | PIRSF | ESCAROLA | 5 | 254 | IPR014476 | GO:0003680 | |
| Cpe05g00183 | 258 | MobiDBLite | consensus disorder prediction | 20 | 40 | - | - | |
| Cpe05g00183 | 258 | CDD | DUF296 | 86 | 169 | IPR005175 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe05g00183 | Cpe-Chr5:963252 | Cpe12g00049 | Cpe-Chr12:266568 | 1.28E-85 | dispersed | |
| Cpe14g00955 | Cpe-Chr14:8063080 | Cpe05g00183 | Cpe-Chr5:963252 | 1.02E-91 | wgd | |
| Cpe15g00220 | Cpe-Chr15:1903902 | Cpe05g00183 | Cpe-Chr5:963252 | 7.54E-119 | wgd | |
| Cpe03g01656 | Cpe-Chr3:12655423 | Cpe05g00183 | Cpe-Chr5:963252 | 2.45E-91 | wgd | |
| Cpe05g00183 | Cpe-Chr5:963252 | Cpe08g00854 | Cpe-Chr8:6759896 | 1.49E-84 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g00183 | - | - | cmo:103503535 | 384.8 |