Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00186 ATGTTATTTATTGATCGTGTATTTGTTGTATTCTGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTACCACCCGATGGGGAATTTGAATTGATGAAATATCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTACTCCCAACAATTAAGGAGCTTGGTAGGACACGTATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAGTTCCTGTTCCAAAACAGACAGCTAAAACTAATTTTCAAGTGACATCGGGTCGAGCCAAGTACAATGCCTCTATTGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAATTGAGCTGATTTCTACAGTGACGGAAAGGAAACCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACCGCATCTGGTTTACGTGTCCGTTTCCTTAAGGTGTGGGAGAAGAGTGGTTACAACACAGTTGAATGGGTTCGTTACATAACTAAAGCTGGATCATACGAGATCCGGGGAAATATGGTGGATGCCTTCCGAACACATATAATGCAAACCAAAGAACTTGGCACTTGTCCTGTGCGGCAGATCGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTTAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTACGAGCTTTTGGATGAAATAATGGATTTTGGTTATCCACAAAACCTCTCGCCTGAAATTCTGAAACTATATATCACTCAAGAAGGAGTTCGCTCACCATTCTCATCCAAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTTTGCGTTGTGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTTTAAATGATAAGATTGGCCTTGAGAAAGAGTCGCAGTTGAAGGCCCGTCCAACTAAAAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTACCACCCGATGGGGAATTTGAATTGATGAAATATCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTACTCCCAACAATTAAGGAGCTTGGTAGGACACGTATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAGTTCCTGTTCCAAAACAGACAGCTAAAACTAATTTTCAAGTGACATCGGGTCGAGCCAAGTACAATGCCTCTATTGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAATTGAGCTGATTTCTACAGTGACGGAAAGGAAACCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACCGCATCTGGTTTACGTGTCCGTTTCCTTAAGGTGTGGGAGAAGAGTGGTTACAACACAGTTGAATGGTGTCTGGAGATGCGGTTCTTGAGGAAGATTGCAGGATTTCTAGGGTTTTCCAAGGATGATGCTCACGACGTCAAGCACGAAGACGAAGAAGTTGAGTCCGGTAATCAGGCTCCCAAACGTGTCCATATGCAGGAAACTGGTCCTCGGAGGGGTTTCAGCGTCCCTGTCCAGGTCGCTGTCAATGTTCCTCAACCCGGCCCTATTCTTGTTCCTTCTAGTTCAGGCGATGGTGGAGTTCAGGGTTTGACGTGGTATGCCAAACGTCTTCGGGTTGATGAAGATGGAGATGTAGCTGAACAGTTCCTCGACGAGGTCTTACCTGAGATGCCAACCAGTACTACTACAGACCATCACAAGCCATATCCACGGTTTCAGATAAACAATAGAAATAGAGTAGCTAAAGTAAAGAACCAGGTTATATTGCAGGAGGGTAAACTCCAACAGTGTATTGAACATCAAGGTAGATTGCTATTGGTATGA 2199 41.88 MLFIDRVFVVFCGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKVPVPKQTAKTNFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEIELISTVTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKARPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKVPVPKQTAKTNFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEIELISTVTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWCLEMRFLRKIAGFLGFSKDDAHDVKHEDEEVESGNQAPKRVHMQETGPRRGFSVPVQVAVNVPQPGPILVPSSSGDGGVQGLTWYAKRLRVDEDGDVAEQFLDEVLPEMPTSTTTDHHKPYPRFQINNRNRVAKVKNQVILQEGKLQQCIEHQGRLLLV 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 981301 994703 + Cp4.1LG05g00140.1 Cpe05g00186 469391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00186 732 Gene3D Mu homology domain, subdomain B 439 546 - -
Cpe05g00186 732 PANTHER AP COMPLEX SUBUNIT MU 208 328 - -
Cpe05g00186 732 PANTHER AP COMPLEX SUBUNIT MU 328 574 - -
Cpe05g00186 732 SUPERFAMILY SNARE-like 206 321 IPR011012 -
Cpe05g00186 732 Gene3D - 195 324 - -
Cpe05g00186 732 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 13 207 IPR036168 -
Cpe05g00186 732 Pfam Adaptor complexes medium subunit family 14 207 IPR028565 -
Cpe05g00186 732 Pfam Adaptor complexes medium subunit family 328 573 IPR028565 -
Cpe05g00186 732 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 328 574 IPR036168 -
Cpe05g00186 732 PANTHER AP-2 COMPLEX SUBUNIT MU 11 207 - -
Cpe05g00186 732 PANTHER AP-2 COMPLEX SUBUNIT MU 328 574 - -
Cpe05g00186 732 PRINTS Clathrin coat assembly protein signature 127 138 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00186 732 PRINTS Clathrin coat assembly protein signature 87 102 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00186 732 PRINTS Clathrin coat assembly protein signature 18 45 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00186 732 PANTHER AP-2 COMPLEX SUBUNIT MU 208 328 - -
Cpe05g00186 732 PANTHER AP COMPLEX SUBUNIT MU 11 207 - -
Cpe05g00186 732 Gene3D Mu homology domain, subdomain B 60 170 - -
Cpe05g00186 732 ProSiteProfiles Mu homology domain (MHD) profile. 1 207 IPR028565 -
Cpe05g00186 732 CDD AP-2_Mu2_Cterm 329 573 IPR043512 -
Cpe05g00186 732 CDD AP2_Mu_N 206 323 IPR043532 -
Cpe05g00186 732 ProSiteProfiles Mu homology domain (MHD) profile. 326 587 IPR028565 -
Cpe05g00186 732 CDD AP-2_Mu2_Cterm 13 207 IPR043512 -
Cpe05g00186 732 Gene3D Mu homology domain, subdomain B 328 574 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00186 K11826 AP2M1; AP-2 complex subunit mu-1 - csv:101220779 690.649
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00186 Cpe15g00359 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00186 Cpe-Chr5:981301 Cpe09g00520 Cpe-Chr9:3495633 2.22E-50 dispersed
Cpe05g00186 Cpe-Chr5:981301 Cpe05g00188 Cpe-Chr5:1009065 1.45E-135 proximal
Cpe05g00186 Cpe-Chr5:981301 Cpe05g00189 Cpe-Chr5:1016030 2.72E-67 proximal
Cpe15g00360 Cpe-Chr15:4791150 Cpe05g00186 Cpe-Chr5:981301 2.13E-116 transposed
Cpe15g00359 Cpe-Chr15:4787008 Cpe05g00186 Cpe-Chr5:981301 4.71E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g640 . . . . . . . . . . . . . . . . Cpe05g00186 . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe08g00847 . . . . . Cmo19g00478 . . . . . Cpe15g00359 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00186 Cpe_Chr05 FPKM 0.0 0.0 0.0 0.0 6.284386 5.606049 6.795572 0.0 0.0 0.0