Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00188 ATGGTGGATGCCTTCCGAACACATATAATGCAAACCAAAGAACTTGGCACTTGTCCTGTGCGGCAGATCGGTGGTTGCTCTTTCTTTTACATGAGAATTAGCAACGTATACATTGTGATTGTTGTTAGCAGCAATGCAAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTTGATGAAGATGCAATTCGAAACAATTTTGTTCTTATTTACGAGCTTTTGGATGAAATAATGGATTTTGGTTATCCACAAAACCTCTCGCCTGAAATTCTGAAACTATATATCACTCAAGAAGGAGTTCGCTCACCATTCTCATCCAAGCCTGCAGATAAACCTGTCCCGAATGCAACTTTACAAGTTACAGGTGCTGTTGGTTGGCGAAGGGAAGGCCTTGTATATAAAAAGAATGAGGTCTTTTTGGATATTGTTGAAAGTGTAAACCTTCTTATGTCTTCAAAAGGTAGTGTTTTGCGTTGTGATGTAACTGGGAAGATTCTTATGAAGTGCTTTCTTTCTGGAATGCCTGATTTAAAGTTGGGTTTAAATGATAAGATTGGCCTTGAGAAAGAGTCGCAGTTGAAGGCCCGTCCAACTAAAAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTTCATCAATGTGTAAATTTGACGAGGTTTAACTCAGAGAAGACAGTCAGCTTTGTACCACCCGATGGGGAATTTGAATTGATGAAATATCGTATTACTGAGGGTGTTAATCTTCCATTTCGAGTACTCCCAACAATTAAGGAGCTTGGTAGGACACGTATGGAAGTTAATGTTAAGGTGAAGAGTGTCTTTGGTGCAAAAATGTTTGCTCTTGGCGTGGTCATTAAAGTTCCTGTTCCAAAACAGACAGCTAAAACTAATTTTCAAGTGACATCGGGTCGAGCCAAGTACAATGCCTCTATTGATTGCATTGTGTGGAAGATCAGAAAATTTCCTGGACAAACAGAACCAACCATGAGTGCAGAAATTGAGCTGATTTCTACAGTGACGGAAAGGAAACCTTGGACACGGCCACCAATTCAGATGGAGTTTCAGGTTCCCATGTTCACCGCATCTGGTTTACGTGTCCGTTTCCTTAAGGTGTGGGAGAAGAGTGGTTACAACACAGTTGAATGGGTTCGTTACATAACTAAAGCTGGATCATACGAGATCCGAAAAGTCATTCTTGAT 1236 40.37 MVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPADKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKARPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKVPVPKQTAKTNFQVTSGRAKYNASIDCIVWKIRKFPGQTEPTMSAEIELISTVTERKPWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRKVILD 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1009065 1015529 + Cp4.1LG05g02170.1 Cpe05g00188 469393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00188 412 Gene3D Mu homology domain, subdomain B 260 407 - -
Cpe05g00188 412 SUPERFAMILY SNARE-like 3 112 IPR011012 -
Cpe05g00188 412 CDD AP-2_Mu2_Cterm 145 407 IPR043512 -
Cpe05g00188 412 PANTHER AP COMPLEX SUBUNIT MU 1 407 - -
Cpe05g00188 412 Gene3D - 1 115 - -
Cpe05g00188 412 CDD AP2_Mu_N 1 114 IPR043532 -
Cpe05g00188 412 Gene3D Mu homology domain, subdomain B 144 403 - -
Cpe05g00188 412 PIRSF AP_complex_mu 2 409 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PRINTS Clathrin coat assembly protein signature 218 245 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PRINTS Clathrin coat assembly protein signature 287 302 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PRINTS Clathrin coat assembly protein signature 327 338 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PRINTS Clathrin coat assembly protein signature 138 166 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PRINTS Clathrin coat assembly protein signature 72 99 IPR001392 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 ProSiteProfiles Mu homology domain (MHD) profile. 147 407 IPR028565 -
Cpe05g00188 412 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 136 156 IPR018240 GO:0006886|GO:0016192|GO:0030131
Cpe05g00188 412 PANTHER AP-2 COMPLEX SUBUNIT MU 1 407 - -
Cpe05g00188 412 Pfam Adaptor complexes medium subunit family 137 407 IPR028565 -
Cpe05g00188 412 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 136 407 IPR036168 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00188 K11826 AP2M1; AP-2 complex subunit mu-1 - csv:101220779 785.408
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00188 Cpe15g00360 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01556 Cpe-Chr1:9267284 Cpe05g00188 Cpe-Chr5:1009065 2.60E-117 dispersed
Cpe05g00188 Cpe-Chr5:1009065 Cpe15g00360 Cpe-Chr15:4791150 0 dispersed
Cpe05g00186 Cpe-Chr5:981301 Cpe05g00188 Cpe-Chr5:1009065 1.45E-135 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00188 Cpe_Chr05 FPKM 3.999495 4.149932 3.522409 3.43457 2.086744 3.021894 1.543995 0.108304 0.0 0.0