Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00201 ATGGTTTGCACTGCCGACGATTTACAAGAATGGAAAGACTTTCCTAAGGGTCTGAGGGTTCTTCTCCTTGATCGGGACAGCCGCTCCGCTACCGAGATAAGTGCAAAACTTGAGGAAATGGAGCATGTTGTCTATTACTGTAATGATGAGAAGGAAGCTTTGTCGGCGATTATGAACACACCGGAAAACTTCCATATTGCAATTCTGGAGATGTGCAAAGGAAATTATGATGAGAGTTTTAAATTGCTCGGAAGTTCCAAGGACTTGCCAATCATAATGACTTCAGATGTTTATTGCCTAAGCACCATGATGAAGTGCATTGCACTTGGTGCAGTTGAGTTCTTGCTGAAACCACTCTCTGAGGACAAACTGAAGAATATCTGGCAGCATGTTCTTCACAAGGCATTTTCCAGTACACCGATGCCTGAAGTAGACTCCGCAGCATCCTTGATGCAGCTCCAATTAGAGAGTGAAGACAATAATGGAGTTCTGGGAGATACGGAAGGTCTTTCTTGGATTCAAGACATTGTATGGGAGCAAGAGCAACCAAACGGAAGTGTTAAATCTCAACTGAACCAGGGATCATCGTTGCAAGGTTGCTGGGAAAGTGGAGATCAAATGAACTGTCCAATGGAAACAGATTGCAGTGACAAAGATGTGCAGTCTAACTTCGTCGAAACTACTTCACATGATTTGGTTTGTGAAGACACCCTTCAGGAGTGCCAACCTCGATTATCTGGCAAGGTAATGGTCAAAGAAGATGAGAACTCTGCAGTTGGTTTAAACGCAGAAAGCGACATTTATCTTCCCTTGCAGAATAAATGTGGCGTCAAAAGTGGTCCTTCAGCTGTAGAGCACTCAATCCAAGGATCTGATGTGAACCCTTCAGCTGGTTCCAAATCGAAGAAAACAAAGGTGGACTGGAGCCCAGAGCTACATAGAAAGTTTATTCAGGCAGTCGAACAGTTGGGCATAGATCGTGCGATTCCTTCCAAAATACTTGAGCTGATGAAAGTTGAAGGTTTGACAAGGCACAACGTTGCAAGTCATCTCCAGAAGTACAGGATGCAAAAGAAACATGCGGTCCACAGAGAAGAAAATCCAAGATTTTCAATGCTAACCAATCATTTGAAACCAAACATGGCTTACCCTTCTTATTATCCTTACTGTGGAATATCCATGTCCACTGTTTATCGAACATGGACACAGAACAATGGCCAACCAGCTAATGTCAACATGTGGGGTCCGCCTGATTATCGCCATTGGCCGCAACCAGGAACTCAGCCATGGAATTCTTATGCTGGGATGCAAGCTGATGCATGGGGTTGCCCTGTGATGCTGCCTTCTCCTGCTCCATATTTTTCATATCCTCAGCAAATTTCATCATCACACAATGTGTATACAGCAAATAAGAGCTATGGCACGCCCCACAGTTCATTTGATCTTCAACCAGATGAGGAGCTGATTGACAAGATTGTGACGGAGGCGAGGAGGAAACCATGGTCACCCCTTCCCTTGGGGCTTAAACGTCCTTCTCCAGAGAGTGTTCTCAAAGAGCTTTCAAAGCAAGGAATCTCCACCGTTCCTCCTCGAATCAACGGCTCCAAACCTCCCTGA 1617 44.84 MVCTADDLQEWKDFPKGLRVLLLDRDSRSATEISAKLEEMEHVVYYCNDEKEALSAIMNTPENFHIAILEMCKGNYDESFKLLGSSKDLPIIMTSDVYCLSTMMKCIALGAVEFLLKPLSEDKLKNIWQHVLHKAFSSTPMPEVDSAASLMQLQLESEDNNGVLGDTEGLSWIQDIVWEQEQPNGSVKSQLNQGSSLQGCWESGDQMNCPMETDCSDKDVQSNFVETTSHDLVCEDTLQECQPRLSGKVMVKEDENSAVGLNAESDIYLPLQNKCGVKSGPSAVEHSIQGSDVNPSAGSKSKKTKVDWSPELHRKFIQAVEQLGIDRAIPSKILELMKVEGLTRHNVASHLQKYRMQKKHAVHREENPRFSMLTNHLKPNMAYPSYYPYCGISMSTVYRTWTQNNGQPANVNMWGPPDYRHWPQPGTQPWNSYAGMQADAWGCPVMLPSPAPYFSYPQQISSSHNVYTANKSYGTPHSSFDLQPDEELIDKIVTEARRKPWSPLPLGLKRPSPESVLKELSKQGISTVPPRINGSKPP 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1083919 1088449 - Cp4.1LG05g02070.1 Cpe05g00201 469406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00201 538 MobiDBLite consensus disorder prediction 280 305 - -
Cpe05g00201 538 SUPERFAMILY Homeodomain-like 301 359 IPR009057 -
Cpe05g00201 538 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 536 IPR044825 GO:0003700|GO:0045893
Cpe05g00201 538 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 303 357 IPR006447 GO:0003677
Cpe05g00201 538 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Cpe05g00201 538 SUPERFAMILY CheY-like 16 141 IPR011006 -
Cpe05g00201 538 MobiDBLite consensus disorder prediction 284 303 - -
Cpe05g00201 538 MobiDBLite consensus disorder prediction 500 538 - -
Cpe05g00201 538 Gene3D - 11 137 - -
Cpe05g00201 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 1 536 - -
Cpe05g00201 538 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 300 359 IPR017930 -
Cpe05g00201 538 Gene3D - 299 361 - -
Cpe05g00201 538 Pfam Myb-like DNA-binding domain 306 355 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00201 - - - cmos:111437350 1041.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00201 Cpe14g00895 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00201 Cpe-Chr5:1083919 Cpe15g00340 Cpe-Chr15:4608853 0 dispersed
Cpe05g00201 Cpe-Chr5:1083919 Cpe05g00202 Cpe-Chr5:1092223 0 tandem
Cpe14g00895 Cpe-Chr14:7508889 Cpe05g00201 Cpe-Chr5:1083919 7.93E-136 wgd
Cpe15g00339 Cpe-Chr15:4592374 Cpe05g00201 Cpe-Chr5:1083919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49487 PF00249 Myb_DNA-binding 1.90E-08 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00201 Cpe_Chr05 FPKM 43.422413 48.092041 46.003124 45.799446 52.458622 53.217209 51.640217 34.026157 35.341461 33.445866