Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00211 ATGGTGGACTCCGTAGCGAAGAGAACGAGGCTGAGGCGAGCAATGGCTAGAGAGGAGCATTTGGAGCAGAGGAAGAAGCGTAGGAAGAAGAGCAGGGATTCCGCTAGTGACAATGTTCGAGGTCAATTTTCGAGCGGAGGATTTCGTGATCGAGGCAAGTGGGTTAATGCTTCTGAAAATTGTAGTGTTAATCGTCGAATGGAGGTAGAAAAAGTGGCTATAAGTGTTGATAGCGAGGAGGAGAGCGTCGAGGAGATTGATGCTGTTATGTTTGGTAGAGAAGGTGGGGATTCGGTCACATTTGTAGGTTCTGAGAGTTCGGGGTTGAAGAATGTGAAAGGATTTGGTACGAAGGGGAATGTTGATGTAATCGATTTAGAGAATGAGGTGATTTTTCTTGACGAGGAGGGTTTTGATTCTGTGAATTCGAACTGTTCGATTTCTAAGTCAGCTGCTGCTGCTGCGAAGGGCGGGGATTTCACTTGCCTTGATTTGGATAACGAAGATGGTAGCAGTGGCTTGATTTCATCTGGCAAGGGAAAGGGTGCTTTAGAGATATCTCCAAATAAAAGCATGGGAGAAAGTAATTGCTTGAATTCTAATTGCTTTGAGAGTGGAGGTTGCTCGTACAGCACTGAGCCCGCGTGTTGTCCTGATGATGCTGTTGATGAGTCCACTGAATCGGGAGCATCATCAAATGAAGAGGAGTCTGACGAATTGAGTGACGAGAATTATGAATTAGAAGAATCAGAAGAGTCAATTTCAGAGTCCTCTAGTAGTTCAGAAAACGAGGAAAATAATGGAAGTTACTGTGTAGAAGCAGGAAGTAGAAGGGAAAGAAAGGAAAGCAGGAAAAGGATAGAAGTTATTGAAGGTGGACTAAAGAGACGTAAAGCTTATGGATTGGACATATTGGCTGATCTTGACAAGGACGATCATAACTTTGATTACGAAAATGGAAATGTTAAGGTTCGTGAGCAGGTGAATTGTGTTGCACGAAGAACCCGTTCACGCTACGTTTGGAAGGTTAAAAAGATGAATAATGATCTTGGAACTGTCAGTCAGCCACTCTGTATTGATGAGGAAGGGTCAGACTTTGAGGGCAATGAGAAAGAAATACATTCTTCGTCAAGGCATGACAGTGGAGATTCTTGTGATAGTGACAGCGATAGCGATCGTGGTCGTGGTCGTGGTCATGGTCGAGCTTGTGATCGTGATCATGATCATGATCATGATCGTGGTCGTGGTCGTGGTCGAGGTCGTGATAGTGATCGTGATCGTACTGCTGATGATGGAATTTACAAGCCAAGAGCCTGGAGTAGTGGTATTAAAAAGAGAACTCAGTTCAACAATCAAAGTGATGATGTTATCTTATCAGAAAAAAATGATGATCATACAAACAAGGTCGAGAATTTTCATGGGGGTAGTAAACTTTGGGATAGTAAAAGTTCTCCTGAAACAGATAAACACAAACGGAGTGAAGACTGTGAAGATTTTCAGAAGGTTCACCCAAAGAATTTCCATGAGTTTGATAGTATTATCAAAACAAAAGGCCACAGTGCCTGCAAAAATCTTGATGTTTTCAATATTCTTGTAGATTCCATAGTTGCAGACAAAGAACTGCCTTCAGATGATTTAGATTCTCGTACAAGTCCACTCTCCCATTGTCCTGAGATGCCTCTTCCTTTGAAGTTCAATTTTAGATTTGAGGAACCACATCTTCCAGAGAAGTTAGAGGAAGAAAAAGAAATGGATAAACTGTGGGCTGAGCTTGACTTTGCTCTCAGATCCAGCGAGATTGGTGCGGTGGATTCTAATACAGTTGAAAATGAAGATGCCTTTCTTTCAAAGCTTGACCAAGCGGATCTTTGTCTTCGTGGGGATCATCAGCTGATACTTGATGAACAAATCGGACTTAGATGCACACGTTGTTCATATGTCAAATTGGAAATCAAAGATATTCTACCTTCTTTTGGTACAAATCCATCTGGAAAGTCGCAGAAGAAGGAATCTGGCTCATTTGAGCATGTTAGATTTGATGACCTTCAACAGGAATTTGATCGTGACCCCCATGACATATCTGATTCACGATATCATGTTGGACGTACAGTGTGGGATATCATTCCCGGTATAAGGGAGAGCATGTATCCACATCAGCGTGAAGGCTTTGAATTTATTTGGGAAAATATAGCTGGTGGAATTTATCTTGATGAGTTAAGAAAAATAAACGGCTTAAACAAGGGGAGTGGATGCATTGTATCACATGCTCCTGGAACAGGAAAAACTCGTCTAACAATTGTTTTTCTTCAGACATACATGGAACTAAATCCAACGTGCCGGCCTATAATTATTGCACCTAGCAGCATGCTCCTTACCTGGGAAGAGGAGTTTTTGAAGTGGAAGGTTGGCATTCCCTTTCATAACCTGAACAAGCGAGATTTTACTCTCAAGGAGAATTTTTCAGCTCTTAAGTTCTTGATGCAAGCTTCTCCATCAGGACAAACTGTGGAGAATGTACGGCTTGTAAAACTGCTTTCCTGGAAAAAGGAGAAAAGCATTTTGGGAGTTAGTTACAGATTGTTTGAGAGACTTGCAGGAGTTCGGAAGAATTCGAAATGTGATAAATCTGGAGATAATGAATGCCCAGATAAGAAGCGTGGACGCCCGAAACATATCTCAAGAGGAAAATGGGACCTTTTGATTAGTTCCATTGACAGAACTTCTGAAAACTTGCCGGAAAGTCCGGAATTGAGAGAAATCAGAGCCTTGATCAGTCCGTTTGTGCATGTATACAGGGGCAACATTCTACGAGAGAAGCTTCCAGGGTTGAGGAAATCTATAGTTATACTACGACCAGCAGAGCTGCAGAAAAGGTATCTTGAAAGCATAGTAGGGAACAATTCTTTTGAAGTGGAATATGCTGAGTCCTTGATATCCGTACACCCTTCCCTGAAACTGAAATGTGATAAAGAAGATTTTGATACCGACAAGGAAATGTTAGAGAAGGTTAGATTGAATCCTGAACTAGGAGTGAAAATACAGTTTCTCCTGGAAATTATACGTCTGAGTGAAGCTTTGAATGAAAAAGTTTTGGTTTTCAGCCAATACATTGAACCATTGTCCTTTATAGATGAGAATCTTAAGTTTCATTTTAATTGGAATGAAGGGGTAGAGGTATTTCATATGGATGGAAAGCGTGATATAAAGAAGCGACAAGCATTGATAAATACATTTAACGATCCGACAAGTGAGGTTCGGGTGTTGCTTGCATCAACAAAGGCTTGCTCAGAAGGTATAAACCTTGTTGGGGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCTTCAGTGGAAAGGCAAGCTGTATGCCGTGCATTTAGACTTGGGCAGAAAAAAGTTGTTTATGTGTATCATCTCATTACCTCTGGGACAAGGGAAGAGGAAAAATACAGTCGACAAATGAAAAAAGATCGGTTGTCTGAGTTAGTTTTCTCTCCTGAACAGAGCAGTAATCAAGTAAAAGTATCATCCACAGATCTGGACGACAGAATTTTGGAAGCAGTTCTTCAACATGAAAAGCTTAAAAATATATTCGAAAGGATAGCGTACCAATCAAAGCAGTCCAGCATGAATGGGAATTTTGGCTTGGCAGACTAG 3660 41.28 MVDSVAKRTRLRRAMAREEHLEQRKKRRKKSRDSASDNVRGQFSSGGFRDRGKWVNASENCSVNRRMEVEKVAISVDSEEESVEEIDAVMFGREGGDSVTFVGSESSGLKNVKGFGTKGNVDVIDLENEVIFLDEEGFDSVNSNCSISKSAAAAAKGGDFTCLDLDNEDGSSGLISSGKGKGALEISPNKSMGESNCLNSNCFESGGCSYSTEPACCPDDAVDESTESGASSNEEESDELSDENYELEESEESISESSSSSENEENNGSYCVEAGSRRERKESRKRIEVIEGGLKRRKAYGLDILADLDKDDHNFDYENGNVKVREQVNCVARRTRSRYVWKVKKMNNDLGTVSQPLCIDEEGSDFEGNEKEIHSSSRHDSGDSCDSDSDSDRGRGRGHGRACDRDHDHDHDRGRGRGRGRDSDRDRTADDGIYKPRAWSSGIKKRTQFNNQSDDVILSEKNDDHTNKVENFHGGSKLWDSKSSPETDKHKRSEDCEDFQKVHPKNFHEFDSIIKTKGHSACKNLDVFNILVDSIVADKELPSDDLDSRTSPLSHCPEMPLPLKFNFRFEEPHLPEKLEEEKEMDKLWAELDFALRSSEIGAVDSNTVENEDAFLSKLDQADLCLRGDHQLILDEQIGLRCTRCSYVKLEIKDILPSFGTNPSGKSQKKESGSFEHVRFDDLQQEFDRDPHDISDSRYHVGRTVWDIIPGIRESMYPHQREGFEFIWENIAGGIYLDELRKINGLNKGSGCIVSHAPGTGKTRLTIVFLQTYMELNPTCRPIIIAPSSMLLTWEEEFLKWKVGIPFHNLNKRDFTLKENFSALKFLMQASPSGQTVENVRLVKLLSWKKEKSILGVSYRLFERLAGVRKNSKCDKSGDNECPDKKRGRPKHISRGKWDLLISSIDRTSENLPESPELREIRALISPFVHVYRGNILREKLPGLRKSIVILRPAELQKRYLESIVGNNSFEVEYAESLISVHPSLKLKCDKEDFDTDKEMLEKVRLNPELGVKIQFLLEIIRLSEALNEKVLVFSQYIEPLSFIDENLKFHFNWNEGVEVFHMDGKRDIKKRQALINTFNDPTSEVRVLLASTKACSEGINLVGASRVVLLDVVWNPSVERQAVCRAFRLGQKKVVYVYHLITSGTREEEKYSRQMKKDRLSELVFSPEQSSNQVKVSSTDLDDRILEAVLQHEKLKNIFERIAYQSKQSSMNGNFGLAD 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1169844 1174678 + Cp4.1LG05g01960.1 Cpe05g00211 469416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 367 433 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 229 255 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 460 497 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 1 48 - -
Cpe05g00211 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 940 1184 IPR027417 -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 872 891 - -
Cpe05g00211 1219 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 879 1216 IPR044567 GO:0080188
Cpe05g00211 1219 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 874 - -
Cpe05g00211 1219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 819 IPR027417 -
Cpe05g00211 1219 Coils Coil 233 267 - -
Cpe05g00211 1219 Pfam Helicase conserved C-terminal domain 1012 1130 IPR001650 -
Cpe05g00211 1219 Gene3D - 689 875 IPR038718 -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 219 277 - -
Cpe05g00211 1219 Gene3D - 941 1214 IPR027417 -
Cpe05g00211 1219 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1018 1182 IPR001650 -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 482 497 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 256 270 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 872 887 - -
Cpe05g00211 1219 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 874 IPR044567 GO:0080188
Cpe05g00211 1219 SMART helicmild6 1045 1130 IPR001650 -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 1 22 - -
Cpe05g00211 1219 MobiDBLite consensus disorder prediction 361 439 - -
Cpe05g00211 1219 CDD SF2_C_SNF 1009 1141 - -
Cpe05g00211 1219 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 879 1216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00211 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 1206.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00211 Cpe-Chr5:1169844 Cpe05g01280 Cpe-Chr5:8929219 1.46E-55 dispersed
Cpe15g00296 Cpe-Chr15:3692070 Cpe05g00211 Cpe-Chr5:1169844 4.89E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00211 Cpe_Chr05 FPKM 0.0 0.0 1.637953 1.844487 2.515877 1.568904 1.864317 2.687382 2.776805 2.81184