Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00222 ATGGGAAAACATGGACCTTGCTGTCACTGTGGAGTTACAAGCACGCCTCTCTGGCGTAATGGACCTCCTGATAAACCAGTATTATGCAACGCATGTGGATCCCGATGGAGGACGAAGGGAACGCTTGCGAACTACACCCCTTTGCATGCTCGAGCTGATCCTGATGAATATGAAAATCACAGGGTTAAGAGCATTTCAATAAATAAAAACAAAGAAGTGAAACTGCTAAAACGAAAGCTGCAACAAGCAGATGGATCGATTGGGTGGACGATTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGACACAAGCAATAGATCCAGTTCTGGGTCAGCCATATCTAATCCTGAGAGCTGTGCTCATTTCAGCAGTGCTGATGCAAGTGACTTAACAGGTCCAGCTCAGTCGATAGTGTGGGAGGCCATGGTGCCTTCGAGAAAGAGGACCTGTGTGAATCGTCCAAAGCAATCCCCGGTCGAGAAACTAACTAAAGATCTATATGGTATTTTATGTGAGCAGAGATCTTCCTATTTCTCTGAAGCTTCTGAGGAGGATCTGCTTTTTGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCGAGCTCAATAGCTCGAGAAGAGGAGTCTGAGGCTAGCTCGGTTTCAGTTGATAACAAGCAATACTTGGTAAATGAGGTCTATTCCCCCCATTCTGCTACTGTTCTTGTATGTAGTGAAAACAAGGGCATGAATGTTCCACCATCTAGGATTGGAAAGATGAAGAATCCTTCTGGATCAGGGGTACAACAAGTACAAATTAAAAGGGACGACTCTCATCATGAAAGTGCACAAATTCTTGGAAGCCATAACTCGCCCTTATGCGACGTAGATATAAATGACATTATAAACTTCGGAGAGTTTGGGAAACAACTTACAAATGAAGAACAGCAGCAGTTAATGAAGTATCTACCACAGATCGATATTGCTGAGCTTCCGGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAGTTTAACTTCCTTCCAACAACTACTTAGGGAGGGTGTTTTCGACGCTTCCTTCCTTGGGACAATGATCGAAGATTGCACGACTCTGAAAAGGCTTGTACTATGTAACTCTTCGAAATCCAAATGGGTCGAACGCTATCATCAACTGAAGAAACGTAAAAATGATGGCGAAGGATCTTTTCTTTCCAACGCCAACACGTCTGTGTCGAGTAACTTCATGAATGTGAAGCGATTGCACGAGAGCTACAATCAAAATGTTCCTGAGGTAAAGACTATCATGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTGTTTGCCTTGCCTACTGATGGAAGCTTTGAATATTTACAATTCATCGAAAGAAGTTCGGATCAAGACCTATTGCTCGATGTGCGATCAAATAATTCATTCCCACAGGCCGAGCTCCTTCACCCGACCTCTCGTACGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCGGTTCACCCAAATCTTGTACATCACTAA 1608 44.09 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYENHRVKSISINKNKEVKLLKRKLQQADGSIGWTIPDQSQGYYRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWEAMVPSRKRTCVNRPKQSPVEKLTKDLYGILCEQRSSYFSEASEEDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSVSVDNKQYLVNEVYSPHSATVLVCSENKGMNVPPSRIGKMKNPSGSGVQQVQIKRDDSHHESAQILGSHNSPLCDVDINDIINFGEFGKQLTNEEQQQLMKYLPQIDIAELPETLKSMFDSPYFKESLTSFQQLLREGVFDASFLGTMIEDCTTLKRLVLCNSSKSKWVERYHQLKKRKNDGEGSFLSNANTSVSSNFMNVKRLHESYNQNVPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPTDGSFEYLQFIERSSDQDLLLDVRSNNSFPQAELLHPTSRTGGRQASTCSSSVHPNLVHH 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1252047 1256827 - Cp4.1LG05g02270.1 Cpe05g00222 469427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00222 535 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cpe05g00222 535 MobiDBLite consensus disorder prediction 508 535 - -
Cpe05g00222 535 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cpe05g00222 535 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cpe05g00222 535 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Cpe05g00222 535 Pfam Asx homology domain 282 391 IPR028020 -
Cpe05g00222 535 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cpe05g00222 535 PANTHER GATA TRANSCRIPTION FACTOR 26 1 535 - -
Cpe05g00222 535 Gene3D - 288 377 IPR038108 -
Cpe05g00222 535 PANTHER OSJNBB0038F03.10 PROTEIN 1 535 IPR044589 -
Cpe05g00222 535 Gene3D - 4 82 IPR013088 GO:0006355|GO:0008270
Cpe05g00222 535 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00222 Cpe-Chr5:1252047 Cpe14g00550 Cpe-Chr14:3491573 2.13E-08 dispersed
Cpe14g00916 Cpe-Chr14:7710007 Cpe05g00222 Cpe-Chr5:1252047 7.27E-155 wgd
Cpe15g00304 Cpe-Chr15:3909388 Cpe05g00222 Cpe-Chr5:1252047 0 wgd
Cpe05g00222 Cpe-Chr5:1252047 Cpe08g00714 Cpe-Chr8:5587559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49489 PF13919 ASXH 8.70E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00222 - - csv:101215311 952.199