Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe05g00237 | ATGTCATCCTCTTCTTCTTCTCCTACTTCTTCTACTACTACTACCACTCAGCAGCAGCAGCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACTGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACTGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACACATTCATTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAGGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTCTACGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA | 1110 | 48.47 | MSSSSSSPTSSTTTTTQQQQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAASPNVGVSHF | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 1340984 | 1343955 | + | Cp4.1LG05g02370.1 | Cpe05g00237 | 469442 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe05g00237 | 369 | PANTHER | AXIAL REGULATOR YABBY 3 | 183 | 367 | - | - | |
| Cpe05g00237 | 369 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cpe05g00237 | 369 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 182 | IPR006780 | GO:0007275 | |
| Cpe05g00237 | 369 | PANTHER | PROTEIN YABBY 6-RELATED | 183 | 367 | IPR006780 | GO:0007275 | |
| Cpe05g00237 | 369 | PANTHER | AXIAL REGULATOR YABBY 3 | 1 | 182 | - | - | |
| Cpe05g00237 | 369 | Pfam | YABBY protein | 31 | 182 | IPR006780 | GO:0007275 | |
| Cpe05g00237 | 369 | Pfam | YABBY protein | 183 | 328 | IPR006780 | GO:0007275 | |
| Cpe05g00237 | 369 | SUPERFAMILY | HMG-box | 272 | 321 | IPR036910 | - | |
| Cpe05g00237 | 369 | Gene3D | High mobility group box domain | 273 | 332 | IPR036910 | - | |
| Cpe05g00237 | 369 | SUPERFAMILY | HMG-box | 137 | 180 | IPR036910 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01541 | Cpe-Chr1:9207257 | Cpe05g00237 | Cpe-Chr5:1340984 | 1.55E-32 | dispersed | |
| Cpe05g00237 | Cpe-Chr5:1340984 | Cpe13g00219 | Cpe-Chr13:1656187 | 2.56E-81 | dispersed | |
| Cpe05g00236 | Cpe-Chr5:1339016 | Cpe05g00237 | Cpe-Chr5:1340984 | 3.82E-76 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49491 | PF04690 | YABBY | 1.90E-60 | CL0114 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe05g00237 | K25796 | - | csv:101214748 | 348.591 |