Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00237 ATGTCATCCTCTTCTTCTTCTCCTACTTCTTCTACTACTACTACCACTCAGCAGCAGCAGCAGCAGCAGCTGGACCACCACCTTCCCTCACCTGAGCAGCTCTGTTATGTCCATTGTAACATTTGTGACACTGTCCTTGCGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACTGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACTGTGCGATGTGGGCACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCTTGCTTTTGCCTTCCGCTAATCAGTTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTTCCCATAACATTCTGGAAAACATCCCAACGCCAAATTCCAATTATCTCATCAACCAGTTCGCAGCTACTAACACTTTTGGAATGCCATCTCGAGGAGTTGCTGATGAGCTCCCTAGGCCACCAGTCATCAACAGACCTCCGGAGAAGAGACAGAGAGTGCCCTCTGCATACAACCGCTTCATCAAAGATGAGATCCAACGCATCAAGTCAGTGAATCCGGATATATCCCACAGAGAAGCCTTCAGTGCTGCTGCTAAGAATTGGGCACACTTTCCACACATTCATTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGGCAGCAGGAGGGAGATCATGGGAGTGTTGTGATGAAAGACAATGGATTCTACGCCGCCGCCTCACCCAACGTTGGTGTCTCCCATTTCTAA 1110 48.47 MSSSSSSPTSSTTTTTQQQQQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHQLGHSFFSPSHNILENIPTPNSNYLINQFAATNTFGMPSRGVADELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDHGSVVMKDNGFYAAASPNVGVSHF 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1340984 1343955 + Cp4.1LG05g02370.1 Cpe05g00237 469442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00237 369 PANTHER AXIAL REGULATOR YABBY 3 183 367 - -
Cpe05g00237 369 MobiDBLite consensus disorder prediction 1 25 - -
Cpe05g00237 369 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Cpe05g00237 369 PANTHER PROTEIN YABBY 6-RELATED 183 367 IPR006780 GO:0007275
Cpe05g00237 369 PANTHER AXIAL REGULATOR YABBY 3 1 182 - -
Cpe05g00237 369 Pfam YABBY protein 31 182 IPR006780 GO:0007275
Cpe05g00237 369 Pfam YABBY protein 183 328 IPR006780 GO:0007275
Cpe05g00237 369 SUPERFAMILY HMG-box 272 321 IPR036910 -
Cpe05g00237 369 Gene3D High mobility group box domain 273 332 IPR036910 -
Cpe05g00237 369 SUPERFAMILY HMG-box 137 180 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00237 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01541 Cpe-Chr1:9207257 Cpe05g00237 Cpe-Chr5:1340984 1.55E-32 dispersed
Cpe05g00237 Cpe-Chr5:1340984 Cpe13g00219 Cpe-Chr13:1656187 2.56E-81 dispersed
Cpe05g00236 Cpe-Chr5:1339016 Cpe05g00237 Cpe-Chr5:1340984 3.82E-76 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00237 . 209 369 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.6e-43 172.9
Cpe13g00219 CST 57 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 5.3e-42 167.9
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 6.7e-54 207.6
Cpe08g00754 CST 14 183 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.7e-37 150.6
Cpe13g00219 CST 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 5.1e-50 194.9
Cpe05g00237 . 182 368 C2C2-YABBY Transcription Factor Family AT4G00180 57.7 6.7e-50 194.5
Cpe01g01541 . 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.6 1.2e-37 154.1
Cpe11g01064 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.0e-61 233.4
Cpe07g01105 . 12 172 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Cpe18g00498 . 7 158 C2C2-YABBY Transcription Factor Family AT2G26580 68.4 1.6e-51 199.5
Cpe04g01191 . 7 156 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 3.7e-48 188.3
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 6.4e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49491 PF04690 YABBY 1.90E-60 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00237 Cpe_Chr05 FPKM 9.987968 12.025362 12.054608 12.239244 14.734397 13.696648 13.491095 18.536566 16.802353 19.557629