Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00247 TGGGTCGGACCGACTGGCCATCGGCTGATCAAAGTAGACGGTAACGGCTCCGGCGACTTCCTCACTGTCCAAGCCGCCGTCAATGCAGTCCCGGATTATAACACCGTGAGCACCGTTATCCGAATCAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGGCGGTGACGAAGCCGTACATAACATTTGAAGGAGGGGGGAAAGAGAGGACGGTGATAGAATGGCACGACAGGGCAGGTGACCGAGATCCCAGTGGGCAGCAGCTGCGTACCTACAGAACAGCCTCGGTCACAGTTTTCGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAGGAATACAGCACCGGCGCCGATGCCTGGAATGNAGCCGTACATAACATTTGAAGGAGGGGGGAAAGAGAGGACGGTGATAGAATGGCACGACAGGGCAGGTGACCGAGATCCCAGTGGGCAGCAGCTGCGTACCTACAGAACAGCCTCGGTCACAGTTTTCGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAGGAATACAGCACCGGCGCCGATGCCTGGAATGCAAGGGTGGCAAGCGGCGGCGTTCCGTATATCCGGCGATAAAGCCTATTTTTCCGGGTGCGGGTTCTACGGTGCTCAAGATACGTTGTGTGATGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTTATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCCATCGCCACTCGGTTCGGTTCTATAGCGGCACAAGATAGAAACTTGCCGGACGAGAAGACCGGGTTTGCTTTCGTCCGGTGCAAGGTTACCGGTTCAGGACCTGTATACGTGGGCCGGGCCATGGGCCAGTACTCTAGAATCGTCTACGCGTATACTTACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACGGTATTTTTTGGAGCATACAAATGCTGGGGGCCAGGAGCAAGCAAAGTGAAGGGAGTATCATGGGCCAGGGAGTTGGAGTTTGAAGAGGCCCATCCATTTCTTGTCAAGAGCTTTGTGAATGGTAGGCACTGGATTGCACCCTCTGATGCTTAG 1131 53.76 WVGPTGHRLIKVDGNGSGDFLTVQAAVNAVPDYNTVSTVIRISPGYYVEKVVVAVTKPYITFEGGGKERTVIEWHDRAGDRDPSGQQLRTYRTASVTVFANYFSARNISFRNTAPAPMPGMXPYITFEGGGKERTVIEWHDRAGDRDPSGQQLRTYRTASVTVFANYFSARNISFRNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNLPDEKTGFAFVRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGAYKCWGPGASKVKGVSWARELEFEEAHPFLVKSFVNGRHWIAPSDA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1412690 1415928 + Cp4.1LG05g02470.1 Cpe05g00247 469452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00247 376 SUPERFAMILY Pectin lyase-like 7 115 IPR011050 -
Cpe05g00247 376 Gene3D - 7 119 IPR012334 -
Cpe05g00247 376 ProSitePatterns Pectinesterase signature 2. 229 238 IPR033131 -
Cpe05g00247 376 PANTHER PECTINESTERASE 68-RELATED 122 375 - -
Cpe05g00247 376 PANTHER PECTINESTERASE 68-RELATED 1 121 - -
Cpe05g00247 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 121 - -
Cpe05g00247 376 Gene3D - 120 375 IPR012334 -
Cpe05g00247 376 Pfam Pectinesterase 12 115 IPR000070 GO:0030599|GO:0042545
Cpe05g00247 376 Pfam Pectinesterase 124 367 IPR000070 GO:0030599|GO:0042545
Cpe05g00247 376 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 122 375 - -
Cpe05g00247 376 SUPERFAMILY Pectin lyase-like 123 373 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00247 Cpe-Chr5:1412690 Cpe18g00395 Cpe-Chr18:5184289 1.37E-91 dispersed
Cpe13g00234 Cpe-Chr13:1827937 Cpe05g00247 Cpe-Chr5:1412690 5.49E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00247 - - cmo:103483059 526.168