Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00252 TATCTCTCTGAGTTCATTGCCACTCTCCTTTTTGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATCCACCAGGTCTGGTGGCCGTGGCTGTGGCTCATGCATTCGCTCTCTTTGTCGGGGTGTCGATGGCAGCGAACATCTCCGGTGGCCATCTCAACCCCGCGGTGACCTTTGGGTTGGCAATCGGCGGCAACATCACCATCTTGACCGGTTTGTTCTACTGGATCGCCCAGTCGCTTGGCTCCATTGTTGCCTGCCTCCTCCTCCAGTTCGTTACCAACGGCAAGAGCATCCCGACCCACGGCGTGGCAGCGGGATTGGGAGCAATTGAAGGTGTAGTGTTCGAGATCATAATCACCTTCGGTTTGGTGTACACAGTTTACGCTACAGCCGCAGACCCTAAAAAGGGCTCTCTTGGGACCATTGCCCCAATTGCTATTGGGTTCATAGTTGGTGCCAACATCCTTGCTGCCGGCCCATTTAGCGGTGGGTCCATGAACCCAGCCCGTTCATTCGGCCCAGCTGTTGTCAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGGCTTATCTACGGTGACGTCTTTATTGGGTCTTATGCCTCTGTTCCAGTGTCTGATGACTATGCTTAA 693 55.27 YLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQSLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFIGSYASVPVSDDYA 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1436359 1437219 + Cp4.1LG05g02500.1 Cpe05g00252 469457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00252 230 Gene3D Glycerol uptake facilitator protein. 1 226 IPR023271 -
Cpe05g00252 230 CDD MIP 1 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 SUPERFAMILY Aquaporin-like 1 220 IPR023271 -
Cpe05g00252 230 Pfam Major intrinsic protein 2 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 TIGRFAM MIP: MIP family channel proteins 3 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 PANTHER AQUAPORIN TIP2-2-RELATED 1 230 - -
Cpe05g00252 230 PANTHER AQUAPORIN-8 1 230 IPR034294 -
Cpe05g00252 230 ProSitePatterns MIP family signature. 61 69 IPR022357 -
Cpe05g00252 230 PRINTS Major intrinsic protein family signature 80 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 PRINTS Major intrinsic protein family signature 158 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 PRINTS Major intrinsic protein family signature 43 67 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 PRINTS Major intrinsic protein family signature 195 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe05g00252 230 PRINTS Major intrinsic protein family signature 125 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00252 Cpe-Chr5:1436359 Cpe17g00544 Cpe-Chr17:4517086 4.58E-120 dispersed
Cpe05g00252 Cpe-Chr5:1436359 Cpe10g00246 Cpe-Chr10:1431950 1.86E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00252 K09873 - csv:101203925 424.861