Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00275 ATGGCTGCTTCTGGGGGTACTGGTTATAGAAATGGCGCTACTTCTAGAAACTCTCTTAAGCCCGATAAGCCCTTTTCCCCTAATTCCCATCCCAAGTCTTCTCTTAAGTCTAAGTCTCTTCCCAATTCTGCTCTTCGTCGTAGTAGCCCTGCATCTCTCGGTGCTGCCAAGGATGACGGTGGAGTTCCTGGAAGAGTTCGAGTGGCGGTTAGATTGCGACCACGCAATTCAGAAGAATTGATAGCTGATGCTGATTTTGCTGATTGCGTAGAATTGCAGCCTGAGCTTAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTACGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGTTGTGGCGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAACGGAACAATTATGGCGTATGGCCAGACTGGTACCGGTAAAACATATACTCTTGGAAGATTAGGAGAGGAAGACACTGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGATGAAGTTTCTTTGGAGACAGATTCTGTCTCGGTTTCCTACTTGCAGCTTTATATGGAGAGCATACAGGACCTTCTTGACCCTACAAATGATAACATTTCCATCGTAGAAGATCCTAAAACTGGTGATGTTTCGCTACCTGGGGCTAGCCTCGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTAGGGGAAGCTCATCGGTTTGCGGCCAATACAAAATTAAACACCAAATCTTCTCGTAGTCATGCAATTCTCATGGTACACGTAAAGCGGTCTCTGAAAGGAAGGGATTCAACTCTGTCAAGTGATATTGGTGGAAATTCTCATTTGGTTAAGACCTTGAAACCTCCTATTGTTCGGAAGGGAAAGTTAGTAGTGGTAGACCTTGCTGGTTCTGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGCGCATTAGGGAAGTGCATAAATGCACTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTTACTAGATTACTACGGGATTCATTTGGTGGAACGGCGAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGTCATCGTGGAGAGACTACAAGTACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTCGACTATAAAAGTTTGTCAAGAAGGTTAGACATCCAATTAGACAAACTGATTGCAGAACATGAAAGGCAGCAAAAAGCATTTGAGAAAGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAAAATTCATTCAAATGCCTTGGAGAAGGAAAGGCTAAAATATCAGAAGGATTACATGGAATCAATTAAGAAGCTTGAAGATCAGCTGATGGTAAAGCAGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGCCGTTGCTGCTTCTGCTTCTAGTATAATTGCTAATGGAGAGGGTTCAGCGGCATCTGCTCTCAAGGAAGTAGCAGAACTAAAGAGGTTGGTTAGCAAGGAAGCACTTTTGAGGAAGGCAGCCGAAGAGGAAGTTAGCAATCTAAGAAGTCAAGTATCCCAACTGAAGAGATCAGAGACTTCTTGCAATTCAGAGATTTTAAAGCTTCACAAGACTCTAGAAGATGAGCAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCCATACTACAAAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCAACTGGACATTGGTGAGCCTGGAAAAGTCCTCAGTTCTCTAGATTCTCTTGTGCAACAAGTTAAGCATTCACAGGCTCAGGAGCCTGCAAATGGGGAGAAAGCTTCAGTAGCCAAACTCTTTGAGCAAGTGGGACTGCAGAAGATCTTGTCATTGCTGGAAGCTGAAGATTACGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATCGTTGAGGCTGGGGGCCTGTCATCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATACACAGAGTGGCTGCAGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCAAGGAGGAATTAGCTTACTGGCCGTGACTGCTGTCAATGCTGAGGATCCCCAAACCCTTCGTATGGTCGCCGGAGCAATCGCCAATTTGTGTGGCAATGATAAGTTGCAGACGAAGCTAAGGGGTGAAGGCGGCATTAAGGCATTGCTCGGTATGGTAAGATGCAGACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCTAATTTTGCCAAGTGCGAGTCAAGGGCCTCTACACAAGGAACAGGGACCAAGGCTGGAAAGTCCTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAAAAATGAAGCATCGACGATCAAACGACACATTGAACTCGCACTCTGTCATTTAGCACAACATGAAGTGAATGCAAAAGACATGATCAGTGGAGGTGCCCTGTGGGAACTCGTTCGGATATCGCGAGACTGTTCACGAGAAGACATAAGGACTCTTGCGCATCGAACATTATTATCGAGCCCAGCATTTCAAGCTGAAATGAGACGATTACGAATAGATTATTGA 2754 43.97 MAASGGTGYRNGATSRNSLKPDKPFSPNSHPKSSLKSKSLPNSALRRSSPASLGAAKDDGGVPGRVRVAVRLRPRNSEELIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILDEVSLETDSVSVSYLQLYMESIQDLLDPTNDNISIVEDPKTGDVSLPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTKSSRSHAILMVHVKRSLKGRDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFEKEIERITKEAQDRISEAEKIHSNALEKERLKYQKDYMESIKKLEDQLMVKQKLGGEKVINEAVAASASSIIANGEGSAASALKEVAELKRLVSKEALLRKAAEEEVSNLRSQVSQLKRSETSCNSEILKLHKTLEDEQNQKKKLEGDIAILQSQLLQLSFEADETSRQLDIGEPGKVLSSLDSLVQQVKHSQAQEPANGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLAVTAVNAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCRHPDVLAQVARGIANFAKCESRASTQGTGTKAGKSFLIEDGALPWIVQNAKNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLLSSPAFQAEMRRLRIDY 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1532983 1540680 + Cp4.1LG05g02520.1 Cpe05g00275 469480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00275 917 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 Coils Coil 531 565 - -
Cpe05g00275 917 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 MobiDBLite consensus disorder prediction 1 60 - -
Cpe05g00275 917 MobiDBLite consensus disorder prediction 8 49 - -
Cpe05g00275 917 CDD KISc 65 406 - -
Cpe05g00275 917 Gene3D Kinesin motor domain 58 439 IPR036961 -
Cpe05g00275 917 Gene3D - 750 911 IPR011989 -
Cpe05g00275 917 Pfam Armadillo/beta-catenin-like repeat 690 727 IPR000225 GO:0005515
Cpe05g00275 917 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cpe05g00275 917 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 PRINTS Kinesin heavy chain signature 309 327 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 PRINTS Kinesin heavy chain signature 358 379 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 Coils Coil 573 600 - -
Cpe05g00275 917 SUPERFAMILY ARM repeat 646 900 IPR016024 -
Cpe05g00275 917 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 909 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe05g00275 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 698 741 IPR000225 GO:0005515
Cpe05g00275 917 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 657 699 IPR000225 GO:0005515
Cpe05g00275 917 PANTHER KINESIN-RELATED 47 909 IPR027640 GO:0003777|GO:0007018
Cpe05g00275 917 Gene3D - 622 749 IPR011989 -
Cpe05g00275 917 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 444 IPR027417 -
Cpe05g00275 917 SMART arm_5 771 811 IPR000225 GO:0005515
Cpe05g00275 917 SMART arm_5 729 770 IPR000225 GO:0005515
Cpe05g00275 917 SMART arm_5 687 728 IPR000225 GO:0005515
Cpe05g00275 917 SMART arm_5 647 686 IPR000225 GO:0005515
Cpe05g00275 917 SMART kinesin_4 63 416 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe05g00275 917 Coils Coil 431 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00275 - - K10396 csv:101209471 1589.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00275 Cpe08g00491 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02220 Cpe-Chr1:18893721 Cpe05g00275 Cpe-Chr5:1532983 2.11E-156 dispersed
Cpe03g01686 Cpe-Chr3:12839084 Cpe05g00275 Cpe-Chr5:1532983 0 dispersed
Cpe05g00275 Cpe-Chr5:1532983 Cpe08g00491 Cpe-Chr8:3167704 0 dispersed
Cpe13g00262 Cpe-Chr13:2028434 Cpe05g00275 Cpe-Chr5:1532983 1.17E-26 wgd
Cpe13g00198 Cpe-Chr13:1523221 Cpe05g00275 Cpe-Chr5:1532983 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g461 . . . . . Bpe07g00141 . . Cmo06g01154 . . . . . . . Cpe05g00275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00119 . . . Cma06g01129 . Car06g00965 . Cpe08g00491 . Bhi12g00356 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00275 Cpe_Chr05 FPKM 5.638869 7.03322 11.363537 10.405358 9.30545 9.7584 9.239054 0.0 0.0 0.0