Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00276 ATGGATGCCCACTCTCTTCCCCCTCCTTTCCACACACGGGATTTCCATCTCCAACAACAATTCCACCACAACAATAATTCTGAAGAAGAACATAGCGCCACCACTACTCGTCTCAAACGAGATCGAGACGATGATGACCACAACAACTCTGCCCCCACCAGCGCTGCCGACGCTGCCGCTGCTGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGCGACAGTGCCAACGCCCTTCGGACTCATGTCATCGAAGTCACTGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCTCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACTGGCACCGTCACCAACGTCACTCTCCGCCAGCCGGCCTCCCCTGGTGCAATTGTCAACTTACATGGTCGCTTTGAGATCTTATCCCTTGCCGGCTCTTTCCTCCCTCCGCCGGCTCCTCCAGCTGCAACCAGCTTGACTATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGCGGTAGCGTTGTGGGTACTTTAGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGCCTGCCGTTGGAAGACGACGACCAACCGCCGATGCCGCCACTGCAGGGCGGAGGCGGAATTGGGTCGCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCGCATCATCAACAGCAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCGGAAGCAGCTTATTGGGGTACGGCTCGACCTCCGTACTAA 882 56.69 MDAHSLPPPFHTRDFHLQQQFHHNNNSEEEHSATTTRLKRDRDDDDHNNSAPTSAADAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHHQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1542453 1543334 - Cp4.1LG05g02610.1 Cpe05g00276 469481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00276 293 PIRSF ESCAROLA 10 293 IPR014476 GO:0003680
Cpe05g00276 293 Gene3D - 94 221 - -
Cpe05g00276 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 293 - -
Cpe05g00276 293 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Cpe05g00276 293 CDD DUF296 95 162 IPR005175 -
Cpe05g00276 293 MobiDBLite consensus disorder prediction 1 85 - -
Cpe05g00276 293 MobiDBLite consensus disorder prediction 215 264 - -
Cpe05g00276 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 293 IPR014476 GO:0003680
Cpe05g00276 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Cpe05g00276 293 MobiDBLite consensus disorder prediction 239 259 - -
Cpe05g00276 293 MobiDBLite consensus disorder prediction 23 50 - -
Cpe05g00276 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00276 Cpe-Chr5:1542453 Cpe12g00023 Cpe-Chr12:113824 2.30E-92 dispersed
Cpe05g00276 Cpe-Chr5:1542453 Cpe05g00278 Cpe-Chr5:1565555 0 proximal
Cpe13g00199 Cpe-Chr13:1532186 Cpe05g00276 Cpe-Chr5:1542453 5.09E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00276 - - csv:101209716 419.853