Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00278 ATGGATGCCCACTCTCTTCCCCCTCCTTTCCACACACGGGATTTCCATCTCCAACAACAATTCCACCACAACAATAATTCTGAAGAAGAACATAGCGCCACCACTACTCGTCTCAAACGAGATCGCGACGATGATGACCACAACAACTCTGCCCCCACCAGCGCTGCCGACGCTGCCGCTGCTGATGGAGAGATTACTCGACGACCCAGAGGAAGACCCGCCGGATCCAAGAATAAACCCAAGCCACCAATTATTATTACTCGAGACAGTGCCAACGCCCTTCGGACTCATGTCATCGAAGTCACTGACGGCTGTGACATCGTCGACAGCGTCGCCACCTTCGCTCGCCGCCGCCAGCGCGGCGTTTGCATTATGAGTGGTACTGGCACCGTCACCAACGTCACTCTCCGCCAGCCGGCCTCCCCTGGTGCAATTGTCAACTTACATGGTCGCTTTGAGATCTTATCCCTTGCCGGCTCTTTCCTCCCTCCGCCGGCTCCTCCAGCTGCAACCAGCTTGACTATTTACCTCGCCGGCGGTCAGGGGCAGGTAGTCGGTGGTAGCGTTGTGGGTACTTTAGTCGCCTCCGGCCCCGTCGTCATCATGGCTGCCTCGTTTAGCAACGCTGCTTATGAACGCCTGCCGTTGGAAGACGACGACCAACCGCCGATGCCGCCACTGCAGGGCGGAGGCGGAATTGGGTCGCCGGATGAAGTTGGACAGTCCCAACCGCCGCAAACAGCCCATCATCAACAGCAACAACAACAACTTCTGGGCGACGGAAATGTGCCGTTATTTCACGGTTTGCCTCCGAATCTGTTAAACTCAATTCAAATGCCGCCATCGGAAGCAGCTTATTGGGGTACGGCTCGACCTCCGTACTAA 885 56.5 MDAHSLPPPFHTRDFHLQQQFHHNNNSEEEHSATTTRLKRDRDDDDHNNSAPTSAADAAAADGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATSLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDDDQPPMPPLQGGGGIGSPDEVGQSQPPQTAHHQQQQQQLLGDGNVPLFHGLPPNLLNSIQMPPSEAAYWGTARPPY 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1565555 1566439 - Cp4.1LG05g03640.1 Cpe05g00278 469483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00278 294 MobiDBLite consensus disorder prediction 239 260 - -
Cpe05g00278 294 MobiDBLite consensus disorder prediction 215 294 - -
Cpe05g00278 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 294 - -
Cpe05g00278 294 ProSiteProfiles PPC domain profile profile. 91 227 IPR005175 -
Cpe05g00278 294 CDD DUF296 95 162 IPR005175 -
Cpe05g00278 294 MobiDBLite consensus disorder prediction 1 85 - -
Cpe05g00278 294 PIRSF ESCAROLA 10 294 IPR014476 GO:0003680
Cpe05g00278 294 Gene3D - 94 221 - -
Cpe05g00278 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 294 IPR014476 GO:0003680
Cpe05g00278 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 208 IPR005175 -
Cpe05g00278 294 MobiDBLite consensus disorder prediction 23 50 - -
Cpe05g00278 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01378 Cpe-Chr4:11179503 Cpe05g00278 Cpe-Chr5:1565555 1.16E-56 dispersed
Cpe05g00278 Cpe-Chr5:1565555 Cpe13g00199 Cpe-Chr13:1532186 2.38E-142 dispersed
Cpe05g00276 Cpe-Chr5:1542453 Cpe05g00278 Cpe-Chr5:1565555 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00278 - - csv:101209716 419.853