Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00296 ATGGTGAGGGGAAAAACCCAAATGAAGCGCATAGAGAATGCTACAAGCCGGCAAGTGACCTTCTCAAAGCGGAGAAATGGGCTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATTTTCTCTCCAAGAGGCAAACTTTATGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGGTATCAGAACAGAACCAAAGAAATTATGTGTACAAACAACCAAGGTTTAGAAGATGTGCAGTTGGAGAAGGAATTTGACTCATTTACCATGACTAAGAAGTTACAGCACCTTGAAGTCTGTAAAAGAAAATTGATGGGAGATAGCTTGGATTTGTGCTCCATGGAAGAGTTGCAGCAGCTTGAAAGGCAAATTGAAAGAAGCTTAACAAAAATTAGGTCAAGAAAGTATCAATTACTGAAGGAAGAAATTACGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCTCTCTTGAAAAAGGTTGGAAGTGAATGGAAGCACCAAGATGAGGCCATGGATGTTGAGACCCAACTGTTCATAGGGCCATCAGATAGAAGAGGCGGCAGTGGCTTCCTGTGTAGATATCTTCACAATCAACCCACTTAA 639 41.0 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKEIMCTNNQGLEDVQLEKEFDSFTMTKKLQHLEVCKRKLMGDSLDLCSMEELQQLERQIERSLTKIRSRKYQLLKEEITKLKEEEKMLLEENAALLKKVGSEWKHQDEAMDVETQLFIGPSDRRGGSGFLCRYLHNQPT 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1658238 1661010 - Cp4.1LG05g03740.1 Cpe05g00296 469501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00296 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cpe05g00296 212 PANTHER MADS-BOX PROTEIN SOC1 1 195 - -
Cpe05g00296 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 Coils Coil 122 142 - -
Cpe05g00296 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 ProSiteProfiles K-box domain profile. 88 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe05g00296 212 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Cpe05g00296 212 Coils Coil 144 171 - -
Cpe05g00296 212 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Cpe05g00296 212 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe05g00296 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cpe05g00296 212 PANTHER MADS BOX PROTEIN 1 195 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00296 Cpe13g00187 CCT
Cpe05g00296 Cpe08g00501 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01699 Cpe-Chr3:12926741 Cpe05g00296 Cpe-Chr5:1658238 7.35E-56 dispersed
Cpe05g00296 Cpe-Chr5:1658238 Cpe17g00324 Cpe-Chr17:2200090 1.06E-66 dispersed
Cpe20g00508 Cpe-Chr20:2963616 Cpe05g00296 Cpe-Chr5:1658238 1.15E-23 dispersed
Cpe13g00187 Cpe-Chr13:1468337 Cpe05g00296 Cpe-Chr5:1658238 9.06E-100 wgd
Cpe05g00296 Cpe-Chr5:1658238 Cpe05g00693 Cpe-Chr5:4253722 8.04E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49495 PF01486 K-box 3.30E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00296 - - csv:101220518 286.96