Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00298 ATGCAAGAGCCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGCCGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTACGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCATGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGAATAT 447 50.34 MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTEY 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1677903 1678516 + Cp4.1LG05g03950.1 Cpe05g00298 469503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00298 149 Pfam KNOX1 domain 36 77 IPR005540 GO:0003677|GO:0005634
Cpe05g00298 149 SMART KNOX1_2 34 78 IPR005540 GO:0003677|GO:0005634
Cpe05g00298 149 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 147 - -
Cpe05g00298 149 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Cpe05g00298 149 Pfam KNOX2 domain 96 147 IPR005541 GO:0003677|GO:0005634
Cpe05g00298 149 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00298 Cpe-Chr5:1677903 Cpe11g00311 Cpe-Chr11:1683405 1.58E-43 dispersed
Cpe05g00298 Cpe-Chr5:1677903 Cpe05g00299 Cpe-Chr5:1679524 4.19E-104 tandem
Cpe13g00185 Cpe-Chr13:1447129 Cpe05g00298 Cpe-Chr5:1677903 2.13E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00298 - - cmos:111459669 268.085