Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00299 ATGCAAGAGCCTGGGTTGGGAATGATGACTGCTGCTGCTGCTGCTGCCGCCGCCTCTACTGCTGCCTTAAGCGCCGACGTTTCCATCTCCGGCGACAACGCCCAACTCAAGGCTGAGATTGCTACTCATCCGCTTTACGAGCAGCTTTTAGCCGCACATGTTGCTTGTCTTCGTGTTGCTACTCCGATTGACCAGCTTCCAATCATCGACGCTCAGTTGGCTCAATCGCACCATGTTTTGCGATCTTATGCCTCTCAGCAGCATCACCAACATGCCCATTCCTTATCGCCTCACGAGCGCCAAGAACTCGACAATTTCCTAGCGCAGTATATGATCGTTTTGTGCTCTTTTAAAGACCAGCTTCAGCAACATGTGAGGGTTCACGCAGTGGAAGCTGTTATGGCATGCCGTGAAATTGAAAATACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGAAGTGGTGCAACGATGTCAGACGACGACGACGACGTTCCCATGGAGTTTTCGCTTGATCAATCTGGTGGTGATGCACACGACATGATGGGGTTTGGACCGCTGCTTCCAACCGAATCGGAAAGATCGTTGATGGAGAGGGTTCGACAAGAATTGAAGATTGAGCTAAAACAGGGATTCAAGTCAAGAATTGAGGATGTGAGAGAGGAGATACTGAGAAAAAGAAGGGCAGGGAAGTTGCCTGGTGATACAACCACAGTATTGAAGAACTGGTGGCAGCAGCATTCCAAGTGGCCATACCCAACGGAAGACGACAAGGCGAAGCTGGTGGAGGAGACGGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAATCAGTAACATCCTTGAAGTCAAAGCGCAAGAGATAA 906 49.45 MQEPGLGMMTAAAAAAAASTAALSADVSISGDNAQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPIIDAQLAQSHHVLRSYASQQHHQHAHSLSPHERQELDNFLAQYMIVLCSFKDQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGSGATMSDDDDDVPMEFSLDQSGGDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1679524 1682979 + Cp4.1LG05g03900.1 Cpe05g00299 469504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00299 301 Gene3D - 223 297 - -
Cpe05g00299 301 SMART HOX_1 226 291 IPR001356 GO:0003677
Cpe05g00299 301 SMART KNOX1_2 34 78 IPR005540 GO:0003677|GO:0005634
Cpe05g00299 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Cpe05g00299 301 Pfam KNOX1 domain 36 77 IPR005540 GO:0003677|GO:0005634
Cpe05g00299 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677|GO:0005634
Cpe05g00299 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 301 - -
Cpe05g00299 301 CDD homeodomain 227 288 IPR001356 GO:0003677
Cpe05g00299 301 Pfam KNOX2 domain 96 147 IPR005541 GO:0003677|GO:0005634
Cpe05g00299 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cpe05g00299 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cpe05g00299 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Cpe05g00299 301 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00299 Cpe13g00185 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00299 Cpe-Chr5:1679524 Cpe13g00185 Cpe-Chr13:1447129 1.76E-152 dispersed
Cpe05g00298 Cpe-Chr5:1677903 Cpe05g00299 Cpe-Chr5:1679524 4.19E-104 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49496 PF03791 KNOX2 1.60E-17 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00299 - - cmos:111459669 581.252