Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00304 ATGGCGTCGTTGGTGGATTCTTCTAGTTGGAGCCTCGTCGCCGCGAAACCTACGTCTTTCAAGCTCAAGGATTTTCTTCTTCAAGACGATTTCAGCTCTTGCTCCTCTAATGGCTTCCGATCGTTTCCACGAAGCCAATGCTGCACCACAACCGTCCGATTTCTCCTCAACAACGATTTCAAACGGACAGATTCTTCCGTAACGAAATCATTACCTCCTCCAACTGCCTCCACCAGAATCGCTCTCCCCGCGGTCTCCACTTTGCAAAAGGCGTCCAACGCTGTTGTCAGAGCATTTAAGCAGTTTCCGTTGCGCAGGAGTATTTCGCGGAAACTGATTCTCATATCCTTTTGGAAGAAATCGAATGTCGTTGATTCCAACGCCAAACGCTGGAAATCGTTTCGGGAATTTCTCGATGAGAAAGAACCGCCGTCGTCGTCGTCTGACCACGATCACGCCGATTCCGCCGATTCCTCGGTCATTGCTGTCGCTGCAAGAAACTCGATCTGTAGCTGTAGTAATAGCATCAGTTGGACGGAGAGCGAATTTACATCGGAGATGATTCCGTCGTCTTCGAGCGGTAATTTCGACAGTTGCAGCGAAATCGACGCCGCCAAGGACGAGAAGGATTCGCCTGGTAATCTCATAGCCAAAACAGATGACATAGCGTTGGGAAAAGATTGCATTGAAGAAACAACCGCCGCCGCCGCCACCACCGCCGCCTACCCGGAGAAAGCTATTAAGCAATTGGGAAATGAAGAAGAAAAGGAGCAGTCGAGTCCAGTTTCAGTCCTGGATTTTGGTTTGAAGCGATTGGAGAAGGGAGCGGAATTGGAACCTGTAGAGTTGAAGAAACGATTCGCTGATTTGGGTTTAATAATATCCACAAAAGAAGGGCAGAGGGAACAGAAGGCATTGGAGCTTGTAAGGCTCGTGAAATCAACGACCAAATCGCAGTGCTTCGCATTTAAAACAGAGAATCTGGTGCTGGATTTGATCCATGAAAAGCTGGAAGAAGAAGATGAATCAAGTGGAAGAGGGTGTGGTTTTGAAGAAGAAAAGGTTGTGAAATTAATACAAGGTTGGGTGGATGGAGAGGGCGGAGAAATGAGGGTGATGGGATGGGAGTTGGCGGAAGGACGGAGTTTGTACATTAAGGATATGGAGAAGGCGGGAAAGTGGAGGAGTTTGGGCGGAGAAAAGGAAGAATTGGCGGCGGAGGTTGAAACTGAGGTTTGGATCTGTTTGCTTGATGAGCTATTACTTGGCCTGTCGTAG 1278 48.44 MASLVDSSSWSLVAAKPTSFKLKDFLLQDDFSSCSSNGFRSFPRSQCCTTTVRFLLNNDFKRTDSSVTKSLPPPTASTRIALPAVSTLQKASNAVVRAFKQFPLRRSISRKLILISFWKKSNVVDSNAKRWKSFREFLDEKEPPSSSSDHDHADSADSSVIAVAARNSICSCSNSISWTESEFTSEMIPSSSSGNFDSCSEIDAAKDEKDSPGNLIAKTDDIALGKDCIEETTAAAATTAAYPEKAIKQLGNEEEKEQSSPVSVLDFGLKRLEKGAELEPVELKKRFADLGLIISTKEGQREQKALELVRLVKSTTKSQCFAFKTENLVLDLIHEKLEEEDESSGRGCGFEEEKVVKLIQGWVDGEGGEMRVMGWELAEGRSLYIKDMEKAGKWRSLGGEKEELAAEVETEVWICLLDELLLGLS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1706930 1709927 - Cp4.1LG05g03630.1 Cpe05g00304 469509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00304 425 PANTHER OS04G0572500 PROTEIN 14 267 - -
Cpe05g00304 425 PANTHER OS04G0572500 PROTEIN 270 423 - -
Cpe05g00304 425 PANTHER OS04G0572500 PROTEIN 14 267 - -
Cpe05g00304 425 PANTHER OS04G0572500 PROTEIN 270 423 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00304 - - - cpep:111794789 776.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00304 Cpe13g00178 CCT
Cpe05g00304 Cpe13g00178 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00304 Cpe-Chr5:1706930 Cpe08g00506 Cpe-Chr8:3275543 1.00E-06 dispersed
Cpe13g00178 Cpe-Chr13:1402043 Cpe05g00304 Cpe-Chr5:1706930 2.68E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g404 . . . . . . . Bma14g00581 . . Cma02g01487 Cma15g01196 Car02g01245 Car15g01084 . . Cpe05g00304 . . . . . . . . . . . . . . Cone8ag0331 Cone12ag0328 . . . Csa05g00326 Chy09g01183 . Blo03g00374 . Bda07g00498 . . Bpe11g00687 . . . Cmo02g01525 Cmo15g01260 . . . . . Cpe13g00178 Bhi12g00201 . . . . . Lcy12g1705 Cla01g00303 Cam01g0315 . Cco01g0322 Clacu01g0315 Cmu01g0300 Cre09g2208 Lsi09g00311 . . Cme09g01716
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008294 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe05g00304 Cpe_Chr05 FPKM 25.901299 27.537291 56.000912 56.163372 12.085774 10.925744 14.775322 33.708988 34.516258 47.539997