Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g00305 ATGGATTTCTTCACCCAATTTTCTGATCCAATTCCTTATTATGGTAATTATAATTGCAAGTCGGAATCTTCGTCCACTCTGTCGGACGCCGGAACGCCGCCCCACGTGGTCGCTAACTCCGACGAGGAAGTGATACTGGCGTCGAACCGGCCAAAGCGGCGGGCTGGTCGGCGGGTTTTTAAGGAGACGAGGCATCCAGTGTACAGAGGAGTGCGGCGAAGGAATAAAGGCAAATGGGTGTGTGAGCTAAGGGAGCCGAATAAAAAGACGAGGATTTGGCTCGGGACTTACCCAACTGCTGAGATGGCGGCACGTGCACACGACGTTGCGGCACTCGCGTTGAGAGGAAAATCGGCTTGTCTCAATTTTGCTGACTCAGCTTGGCGGTTTCCGATTCCATCGAGTAATGATCCGTCGGTGATCAGAGAAGCGGCGGCGAAGGCGGCGAAAGAATGTGAGTATGAAGAGTGCAATGTGAGTCGGGAAGAGGACGACGTGATTTTGAGTCAGCCAAAGGCGGAGCCTGATCAACGGGATGACGTCGACGATGAGGCTTTGTCGAATATGCCCATGTTGCTTGCCAGCATGGCGGAAGGACCTCTGCTTTCTCCTCCTCGTTTTTGCGTACGCGATGACGTGGGGTGGGACAACGTGGATACAAATGATGATGTGTCATTGTGGAGCTTTTAG 690 52.9 MDFFTQFSDPIPYYGNYNCKSESSSTLSDAGTPPHVVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNKGKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALALRGKSACLNFADSAWRFPIPSSNDPSVIREAAAKAAKECEYEECNVSREEDDVILSQPKAEPDQRDDVDDEALSNMPMLLASMAEGPLLSPPRFCVRDDVGWDNVDTNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1712001 1712690 - Cp4.1LG05g03760.1 Cpe05g00305 469510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g00305 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Cpe05g00305 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Cpe05g00305 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 229 IPR045277 GO:0003700
Cpe05g00305 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Cpe05g00305 229 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Cpe05g00305 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Cpe05g00305 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Cpe05g00305 229 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Cpe05g00305 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1F 1 229 - -
Cpe05g00305 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00247 Cpe-Chr3:1233373 Cpe05g00305 Cpe-Chr5:1712001 8.59E-37 dispersed
Cpe05g00305 Cpe-Chr5:1712001 Cpe08g01036 Cpe-Chr8:7953089 6.52E-39 dispersed
Cpe05g00305 Cpe-Chr5:1712001 Cpe05g00306 Cpe-Chr5:1715512 7.53E-36 tandem
Cpe13g00177 Cpe-Chr13:1392367 Cpe05g00305 Cpe-Chr5:1712001 2.48E-84 wgd
Cpe05g00305 Cpe-Chr5:1712001 Cpe05g00676 Cpe-Chr5:4119634 3.09E-61 wgd
Cpe05g00305 Cpe-Chr5:1712001 Cpe09g00113 Cpe-Chr9:658358 2.26E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49497 PF00847 AP2 1.00E-15 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g00305 - - bhj:120092445 375.555